| Protein: | gi|1082336, gi|5... |
| Organism: | Homo sapiens |
| Length: | 707 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|1082336, gi|5....
| Description | E-value | Query Range |
Subject Range |
|
|
900.0 | [0..1] | [707..1] |
|
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864.0 | [0..1] | [660..1] |
|
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862.0 | [0..1] | [660..1] |
|
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862.0 | [0..1] | [660..1] |
|
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861.0 | [0..1] | [660..1] |
|
|
861.0 | [0..1] | [660..1] |
|
|
832.0 | [0..1] | [660..35] |
|
Region A: Residues: [1-172] |
1 11 21 31 41 51
| | | | | |
1 MQTSETGSDT GSTVTLQTSV ASQAAVPTQV VQQVPVQQQV QQVQTVQQVQ HVYPAQVQYV 60
61 EGSDTVYTNG AIRTTTYPYT ETQMYSQNTG GNYFDTQGSS AQVTTVVSSH SMVGTGGIQM 120
121 GVTGGQLISS SGGTYLIGNS MENSGHSVTH TTRASPATIE MAIETLQKSD GL
|
| Detection Method: |  |
| Confidence: | 91.055517 |
| Match: | PF04589.3 |
| Description: | No description for PF04589.3 was found. |
Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.
|
Region A: Residues: [173-325] |
1 11 21 31 41 51
| | | | | |
1 STHRSSLLNS HLQWLLDNYE TAEGVSLPRS TLYNHYLRHC QEHKLDPVNA ASFGKLIRSI 60
61 FMGLRTRRLG TRGNSKYHYY GIRVKPDSPL NRLQEDMQYM AMRQQPMQQK QRYKPMQKVD 120
121 GVADGFTGSG QQTGTSVEQT VIAQSQHHQQ FLD
|
| Detection Method: | |
| Confidence: | 29.522879 |
| Match: | 1dp7P |
| Description: | Class II MHC transcription factor RFX1 |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [326-401] |
1 11 21 31 41 51
| | | | | |
1 ASRALPEFGE VEISSLPDGT TFEDIKSLQS LYREHCEAIL DVVVNLQFSL IEKLWQTFWR 60
61 YSPSTPTDGT TITESS
|
| Detection Method: | |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
| MCM Score |
SCOP Match |
SCOP Description | ||
| View | Download | 0.781 | a.118.8 | TPR-like |
| View | Download | 0.756 | a.118.8 | TPR-like |
| View | Download | 0.748 | a.27.1 | Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases |
| View | Download | 0.743 | a.27.1 | Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases |
| View | Download | 0.714 | a.118.8 | TPR-like |
| View | Download | 0.639 | a.8.11 | Description not found. |
| View | Download | 0.629 | a.8.11 | Description not found. |
| View | Download | 0.553 | d.58.11 | EF-G/eEF-2 domains III and V |
| View | Download | 0.523 | a.112.1 | Description not found. |
| View | Download | 0.521 | a.112.1 | Description not found. |
| View | Download | 0.430 | a.59.1 | PAH2 domain |
| View | Download | 0.411 | a.4.1 | Homeodomain-like |
| View | Download | 0.332 | a.4.12 | TrpR-like |
| View | Download | 0.321 | a.16.1 | S15/NS1 RNA-binding domain |
| View | Download | 0.306 | d.58.4 | Dimeric alpha+beta barrel |
|
Region A: Residues: [402-608] |
1 11 21 31 41 51
| | | | | |
1 NLSEIESRLP KAKLITLCKH ESILKWMCNC DHGMYQALVE ILIPDVLRPI PSALTQAIRN 60
61 FAKSLEGWLS NAMNNIPQRM IQTKVAAVSA FAQTLRRYTS LNHLAQAARA VLQNTSQINQ 120
121 MLSDLNRVDF ANVQEQASWV CQCDDNMVQR LETDFKMTLQ QQSTLEQWAA WLDNVMMQAL 180
181 KPYEGRPSFP KAARQFLLKW SFYSSMV
|
| Detection Method: | |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.
|
Region A: Residues: [609-707] |
1 11 21 31 41 51
| | | | | |
1 IRDLTLRSAA SFGSFHLIRL LYDEYMFYLV EHRVAQATGE TPIAVMGEVR EAERAVTHWV 60
61 IKNKPELHFS LNTLLIKTMV PNQVSLRARR DCGVIARVP
|
| Detection Method: | |
Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.
| MCM Score |
GO Score |
GO Term |
SCOP Match |
SCOP Description | ||
| View | Download | 0.969 | N/A | N/A | a.100.1 | 6-phosphogluconate dehydrogenase C-terminal domain-like |
| View | Download | 0.929 | N/A | N/A | a.100.1 | 6-phosphogluconate dehydrogenase C-terminal domain-like |
| View | Download | 0.798 | N/A | N/A | a.100.1 | 6-phosphogluconate dehydrogenase C-terminal domain-like |
| View | Download | 0.793 | N/A | N/A | a.4.9 | Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 |
| View | Download | 0.779 | N/A | N/A | a.4.6 | C-terminal effector domain of the bipartite response regulators |
| View | Download | 0.758 | N/A | N/A | a.2.17 | Description not found. |
| View | Download | 0.726 | N/A | N/A | a.4.9 | Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 |
| View | Download | 0.670 | N/A | N/A | a.7.6 | Ribosomal protein S20 |
| View | Download | 0.608 | N/A | N/A | a.4.6 | C-terminal effector domain of the bipartite response regulators |
| View | Download | 0.501 | N/A | N/A | a.8.9 | Description not found. |
| View | Download | 0.380 | N/A | N/A | d.68.8 | Description not found. |
| View | Download | 0.327 | N/A | N/A | a.100.1 | 6-phosphogluconate dehydrogenase C-terminal domain-like |
| View | Download | 0.279 | N/A | N/A | a.100.1 | 6-phosphogluconate dehydrogenase C-terminal domain-like |
| View | Download | 0.252 | N/A | N/A | d.52.7 | Ribosome-binding factor A, RbfA |
