| Protein: | XRCC5 |
| Organism: | Homo sapiens |
| Length: | 732 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for XRCC5.
| Description | E-value | Query Range |
Subject Range |
|
|
0.0 | [1..732] | [54..785] |
|
|
0.0 | [1..732] | [1..732] |
|
|
0.0 | [1..732] | [1..732] |
|
|
0.0 | [1..732] | [1..732] |
|
Region A: Residues: [1-558] |
1 11 21 31 41 51
| | | | | |
1 MVRSGNKAAV VLCMDVGFTM SNSIPGIESP FEQAKKVITM FVQRQVFAEN KDEIALVLFG 60
61 TDGTDNPLSG GDQYQNITVH RHLMLPDFDL LEDIESKIQP GSQQADFLDA LIVSMDVIQH 120
121 ETIGKKFEKR HIEIFTDLSS RFSKSQLDII IHSLKKCDIS LQFFLPFSLG KEDGSGDRGD 180
181 GPFRLGGHGP SFPLKGITEQ QKEGLEIVKM VMISLEGEDG LDEIYSFSES LRKLCVFKKI 240
241 ERHSIHWPCR LTIGSNLSIR IAAYKSILQE RVKKTWTVVD AKTLKKEDIQ KETVYCLNDD 300
301 DETEVLKEDI IQGFRYGSDI VPFSKVDEEQ MKYKSEGKCF SVLGFCKSSQ VQRRFFMGNQ 360
361 VLKVFAARDD EAAAVALSSL IHALDDLDMV AIVRYAYDKR ANPQVGVAFP HIKHNYECLV 420
421 YVQLPFMEDL RQYMFSSLKN SKKYAPTEAQ LNAVDALIDS MSLAKKDEKT DTLEDLFPTT 480
481 KIPNPRFQRL FQCLLHRALH PREPLPPIQQ HIWNMLNPPA EVTTKSQIPL SKIKTLFPLI 540
541 EAKKKDQVTA QEIFQDNH
|
| Detection Method: |  |
| Confidence: | 171.0 |
| Match: | 1jeqB |
| Description: | Ku80 subunit |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| double-stranded telomeric DNA binding | 8.64621483095491 | bayes_pls_golite062009 |
| telomeric DNA binding | 5.16364366157397 | bayes_pls_golite062009 |
| single-stranded DNA-dependent ATP-dependent DNA helicase activity | 4.34918548316444 | bayes_pls_golite062009 |
| single-stranded DNA-dependent ATPase activity | 4.01349229451071 | bayes_pls_golite062009 |
| DNA helicase activity | 3.77011551449253 | bayes_pls_golite062009 |
| binding | 2.75824485094584 | bayes_pls_golite062009 |
| protein binding | 2.58357303743968 | bayes_pls_golite062009 |
| promoter binding | 2.1752902301709 | bayes_pls_golite062009 |
| transcription activator activity | 1.52393053398849 | bayes_pls_golite062009 |
| transcription regulator activity | 1.27592771659837 | bayes_pls_golite062009 |
| DNA-dependent ATPase activity | 0.985753648509262 | bayes_pls_golite062009 |
| protein complex binding | 0.94234534987624 | bayes_pls_golite062009 |
| single-stranded DNA binding | 0.814975395718076 | bayes_pls_golite062009 |
| protein dimerization activity | 0.73404855126602 | bayes_pls_golite062009 |
| nucleic acid binding | 0.655463239522058 | bayes_pls_golite062009 |
| protein heterodimerization activity | 0.64812784969409 | bayes_pls_golite062009 |
| ATP-dependent DNA helicase activity | 0.506640285146188 | bayes_pls_golite062009 |
| DNA binding | 0.496246846559375 | bayes_pls_golite062009 |
| structure-specific DNA binding | 0.450760554291027 | bayes_pls_golite062009 |
| receptor binding | 0.234020194580985 | bayes_pls_golite062009 |
| transcription repressor activity | 0.233577421367532 | bayes_pls_golite062009 |
| protein C-terminus binding | 0.15516806759612 | bayes_pls_golite062009 |
| identical protein binding | 0.125363466534611 | bayes_pls_golite062009 |
| collagen binding | 0.113837148027681 | bayes_pls_golite062009 |
|
Region A: Residues: [559-732] |
1 11 21 31 41 51
| | | | | |
1 EDGPTAKKLK TEQGGAHFSV SSLAEGSVTS VGSVNPAENF RVLVKQKKAS FEEASNQLIN 60
61 HIEQFLDTNE TPYFMKSIDC IRAFREEAIK FSEEQRFNNF LKALQEKVEI KQLNHFWEIV 120
121 VQDGITLITK EEASGSSVTA EEAKKFLAPK DKPSGDTAAV FEEGGDVDDL LDMI
|
| Detection Method: | |
| Confidence: | 51.30103 |
| Match: | 1rw2A |
| Description: | Three-dimensional structure of Ku80 CTD |
Matching Structure (courtesy of the PDB): |
|
