| Protein: | RMND5B |
| Organism: | Homo sapiens |
| Length: | 393 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RMND5B.
| Description | E-value | Query Range |
Subject Range |
|
|
0.0 | [1..393] | [1..393] |
|
|
0.0 | [1..393] | [1..393] |
|
|
0.0 | [1..393] | [1..393] |
|
|
0.0 | [1..393] | [1..393] |
|
|
0.0 | [1..393] | [1..393] |
|
|
0.0 | [1..393] | [1..393] |
|
|
0.0 | [1..393] | [1..391] |
|
Region A: Residues: [1-150] |
1 11 21 31 41 51
| | | | | |
1 MEQCACVERE LDKVLQKFLT YGQHCERSLE ELLHYVGQLR AELASAALQG TPLSATLSLV 60
61 MSQCCRKIKD TVQKLASDHK DIHSSVSRVG KAIDRNFDSE ICGVVSDAVW DAREQQQQIL 120
121 QMAIVEHLYQ QGMLSVAEEL CQESTLNVDL
|
| Detection Method: |  |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
| MCM Score |
GO Score |
GO Term |
SCOP Match |
SCOP Description | ||
| View | Download | 0.968 | N/A | N/A | a.24.9 | alpha-catenin/vinculin |
|
Region A: Residues: [151-393] |
1 11 21 31 41 51
| | | | | |
1 DFKQPFLELN RILEALHEQD LGPALEWAVS HRQRLLELNS SLEFKLHRLH FIRLLAGGPA 60
61 KQLEALSYAR HFQPFARLHQ REIQVMMGSL VYLRLGLEKS PYCHLLDSSH WAEICETFTR 120
121 DACSLLGLSV ESPLSVSFAS GCVALPVLMN IKAVIEQRQC TGVWNHKDEL PIEIELGMKC 180
181 WYHSVFACPI LRQQTSDSNP PIKLICGHVI SRDALNKLIN GGKLKCPYCP MEQNPADGKR 240
241 IIF
|
| Detection Method: | |
| Confidence: | 14.0 |
| Match: | 1fbvA |
| Description: | Cbl; N-terminal domain of cbl (N-cbl); CBL |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| binding | 3.12724619324809 | bayes_pls_golite062009 |
| ubiquitin-protein ligase activity | 2.53071837898279 | bayes_pls_golite062009 |
| small conjugating protein ligase activity | 2.35007226898734 | bayes_pls_golite062009 |
| protein binding | 2.14586566310919 | bayes_pls_golite062009 |
| transcription regulator activity | 1.79278689121507 | bayes_pls_golite062009 |
| acid-amino acid ligase activity | 1.60687631865164 | bayes_pls_golite062009 |
| nucleic acid binding | 1.59077352153329 | bayes_pls_golite062009 |
| DNA binding | 1.49540318847431 | bayes_pls_golite062009 |
| transcription repressor activity | 0.937092252245555 | bayes_pls_golite062009 |
| transcription factor activity | 0.862300124095671 | bayes_pls_golite062009 |
| phosphotransferase activity, alcohol group as acceptor | 0.748479359639348 | bayes_pls_golite062009 |
| kinase activity | 0.662911740280035 | bayes_pls_golite062009 |
| molecular adaptor activity | 0.657981592359252 | bayes_pls_golite062009 |
| SH3/SH2 adaptor activity | 0.559549509453052 | bayes_pls_golite062009 |
| phosphoprotein binding | 0.53553338374323 | bayes_pls_golite062009 |
| transferase activity, transferring phosphorus-containing groups | 0.493362981045534 | bayes_pls_golite062009 |
| ligase activity, forming carbon-nitrogen bonds | 0.452350351194157 | bayes_pls_golite062009 |
| protein phosphorylated amino acid binding | 0.43808715710519 | bayes_pls_golite062009 |
| protein kinase activity | 0.373245013550244 | bayes_pls_golite062009 |
| protein binding, bridging | 0.370788151516215 | bayes_pls_golite062009 |
| transferase activity | 0.169970258787201 | bayes_pls_golite062009 |
| signal transducer activity | 0.150891693412241 | bayes_pls_golite062009 |
| molecular transducer activity | 0.150891693412241 | bayes_pls_golite062009 |
