| Protein: | HNRNPF |
| Organism: | Homo sapiens |
| Length: | 415 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for HNRNPF.
| Description | E-value | Query Range |
Subject Range |
|
|
2.0E-55 | [1..414] | [1..420] |
|
|
1.0E-54 | [1..409] | [1..425] |
|
|
2.0E-54 | [1..414] | [1..422] |
|
Region A: Residues: [1-110] |
1 11 21 31 41 51
| | | | | |
1 MMLGPEGGEG FVVKLRGLPW SCSVEDVQNF LSDCTIHDGA AGVHFIYTRE GRQSGEAFVE 60
61 LGSEDDVKMA LKKDRESMGH RYIEVFKSHR TEMDWVLKHS GPNSADSAND
|
| Detection Method: |  |
| Confidence: | 6.69897 |
| Match: | 2db1A |
| Description: | No description for 2db1A was found. |
|
Region A: Residues: [111-202] |
1 11 21 31 41 51
| | | | | |
1 GFVRLRGLPF GCTKEEIVQF FSGLEIVPNG ITLPVDPEGK ITGEAFVQFA SQELAEKALG 60
61 KHKERIGHRY IEVFKSSQEE VRSYSDPPLK FM
|
| Detection Method: | |
| Confidence: | 10.39794 |
| Match: | 1wg5A |
| Description: | Solution structure of the first RRM domain in heterogeneous nuclear ribonucleoprotein H |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| RNA binding | 6.73097473547076 | bayes_pls_golite062009 |
| mRNA binding | 5.29759606920196 | bayes_pls_golite062009 |
| nucleic acid binding | 4.92126426323641 | bayes_pls_golite062009 |
| 4.67888641618755 | bayes_pls_golite062009 | |
| binding | 3.64400841800969 | bayes_pls_golite062009 |
| poly-pyrimidine tract binding | 3.11990160533699 | bayes_pls_golite062009 |
| single-stranded RNA binding | 2.93798024346416 | bayes_pls_golite062009 |
| transcription regulator activity | 1.92450390013691 | bayes_pls_golite062009 |
| DNA binding | 1.8021593476478 | bayes_pls_golite062009 |
| snRNA binding | 1.76821382294389 | bayes_pls_golite062009 |
| structural molecule activity | 1.29928829870122 | bayes_pls_golite062009 |
| transcription factor activity | 1.15127506309683 | bayes_pls_golite062009 |
| protein binding | 1.12215421354121 | bayes_pls_golite062009 |
| U1 snRNA binding | 0.612226940931031 | bayes_pls_golite062009 |
| mRNA 3'-UTR binding | 0.591700155096213 | bayes_pls_golite062009 |
| sequence-specific DNA binding | 0.383589644462932 | bayes_pls_golite062009 |
|
Region A: Residues: [203-288] |
1 11 21 31 41 51
| | | | | |
1 SVQRPGPYDR PGTARRYIGI VKQAGLERMR PGAYSTGYGG YEEYSGLSDG YGFTTDLFGR 60
61 DLSYCLSGMY DHRYGDSEFT VQSTTG
|
| Detection Method: | |
| Confidence: | 1.15 |
| Match: | 1jchA |
| Description: | Ribonuclease domain of colicin E3; Colicin E3 translocation domain; Colicin E3 receptor domain |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [289-415] |
1 11 21 31 41 51
| | | | | |
1 HCVHMRGLPY KATENDIYNF FSPLNPVRVH IEIGPDGRVT GEADVEFATH EEAVAAMSKD 60
61 RANMQHRYIE LFLNSTTGAS NGAYSSQVMQ GMGVSAAQAT YSGLESQSVS GCYGAGYSGQ 120
121 NSMGGYD
|
| Detection Method: | |
| Confidence: | 9.30103 |
| Match: | 2hgnA |
| Description: | No description for 2hgnA was found. |
