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View Structure Prediction Details

Protein: POLA2
Organism: Homo sapiens
Length: 598 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for POLA2.

Description E-value Query
Range
Subject
Range
gi|114638538, gi... - gi|114638540|ref|XP_001169495.1| PREDICTED: polymerase (DNA directed), alpha 2 (70kD subunit) isofor...
0.0 [1..598] [1..598]
gi|109105512, gi... - gi|109105514|ref|XP_001114001.1| PREDICTED: similar to polymerase (DNA directed), alpha 2 (70kD subu...
0.0 [1..598] [1..598]
gi|439601, gi|60... - gi|6015006|sp|Q14181|DPOA2_HUMAN DNA polymerase alpha subunit B (DNA polymerase alpha 70 kDa subunit...
0.0 [1..598] [1..598]
DPOA2_MOUSE - DNA polymerase alpha subunit B OS=Mus musculus GN=Pola2 PE=1 SV=2
0.0 [1..598] [1..600]
DPOA2_RAT - DNA polymerase alpha subunit B OS=Rattus norvegicus GN=Pola2 PE=1 SV=2
0.0 [1..598] [1..600]
gi|73983698 - gi|73983698|ref|XP_533234.2| PREDICTED: similar to polymerase (DNA directed), alpha 2 (70kD subunit)...
0.0 [1..598] [1..595]

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Predicted Domain #1
Region A:
Residues: [1-114]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSASAQQLAE ELQIFGLDCE EALIEKLVEL CVQYGQNEEG MVGELIAFCT STHKVGLTSE  60
   61 ILNSFEHEFL SKRLSKARHS TCKDSGHAGA RDIVSIQELI EVEEEEEILL NSYT

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

    MCM
Score
GO
Score
GO
Term
SCOP
Match
SCOP Description
View Download 0.751 0.060 protein heterodimerization activity a.74.1 Cyclin-like
View Download 0.708 N/A N/A a.74.1 Cyclin-like
View Download 0.696 N/A N/A a.74.1 Cyclin-like
View Download 0.679 N/A N/A a.74.1 Cyclin-like
View Download 0.664 N/A N/A a.74.1 Cyclin-like

Predicted Domain #2
Region A:
Residues: [115-215]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 TPSKGSQKRA ISTPETPLTK RSVSTRSPHQ LLSPSSFSPS ATPSQKYNSR SNRGEVVTSF  60
   61 GLAQGVSWSG RGGAGNISLK VLGCPEALTG SYKSMFQKLP D

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

    MCM
Score
GO
Score
GO
Term
SCOP
Match
SCOP Description
View Download 0.257 0.001 protein heterodimerization activity a.118.11 Cytochrome c oxidase subunit E
View Download 0.211 N/A N/A d.54.1 Enolase N-terminal domain-like

Predicted Domain #3
Region A:
Residues: [216-337]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 IREVLTCKIE ELGSELKEHY KIEAFTPLLA PAQEPVTLLG QIGCDSNGKL NNKSVILEGD  60
   61 REHSSGAQIP VDLSELKEYS LFPGQVVIME GINTTGRKLV ATKLYEGVPL PFYQPTEEDA 120
  121 DF

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

    MCM
Score
GO
Score
GO
Term
SCOP
Match
SCOP Description
View Download 0.418 0.960 protein heterodimerization activity b.1.1 Immunoglobulin
View Download 0.303 0.960 protein heterodimerization activity b.40.4 Nucleic acid-binding proteins
View Download 0.310 0.960 protein heterodimerization activity b.1.2 Fibronectin type III
View Download 0.285 0.960 protein heterodimerization activity c.30.1 PreATP-grasp domain
View Download 0.245 0.960 protein heterodimerization activity b.40.4 Nucleic acid-binding proteins

Predicted Domain #4
Region A:
Residues: [338-598]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 EQSMVLVACG PYTTSDSITY DPLLDLIAVI NHDRPDVCIL FGPFLDAKHE QVENCLLTSP  60
   61 FEDIFKQCLR TIIEGTRSSG SHLVFVPSLR DVHHEPVYPQ PPFSYSDLSR EDKKQVQFVS 120
  121 EPCSLSINGV IFGLTSTDLL FHLGAEEISS SSGTSDRFSR ILKHILTQRS YYPLYPPQED 180
  181 MAIDYESFYV YAQLPVTPDV LIIPSELRYF VKDVLGCVCV NPGRLTKGQV GGTFARLYLR 240
  241 RPAADGAERQ SPCIAVQVVR I

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 7.0
Match: 2dxlA
Description: No description for 2dxlA was found.

Predicted functions:

Term Confidence Notes
hydrolase activity 2.15398287574737 bayes_pls_golite062009
hydrolase activity, acting on ester bonds 2.11518948144723 bayes_pls_golite062009
protein serine/threonine phosphatase activity 1.72108778738758 bayes_pls_golite062009
catalytic activity 1.39852585255405 bayes_pls_golite062009
phosphoprotein phosphatase activity 1.23036240099336 bayes_pls_golite062009
phosphoric ester hydrolase activity 0.899406797746366 bayes_pls_golite062009
binding 0.852545739165539 bayes_pls_golite062009
phosphatase activity 0.76188635342041 bayes_pls_golite062009
transporter activity 0.72444760979153 bayes_pls_golite062009
protein binding 0.682314750442084 bayes_pls_golite062009
structural molecule activity 0.204234628453541 bayes_pls_golite062009
substrate-specific transporter activity 0.169394141800139 bayes_pls_golite062009
protein transporter activity 0.10469955758282 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle