YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|215706480, gi...
Organism:	Oryza sativa Japonica Group
Length:	280 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|215706480, gi....

Description	E-value	Query Range	Subject Range
gi\|240255663, gi... - gi\|51972142\|gb\|AAU15175.1\| At3g57360 [Arabidopsis thaliana], gi\|50198814\|gb\|AAT70440.1\| At3g57360 [A...	265.0	[0..13]	[279..3]
gi\|49646061 - gi\|49646061\|emb\|CAG84128.1\| YALI0A18293p [Yarrowia lipolytica] gi\|50545317, gi\|... - gi\|50545317\|ref\|XP_500196.1\| YALI0A18293p [Yarrowia lipolytica], gi\|49646061\|emb\|CAG84128.1\| YALI0A1...	259.0	[0..3]	[280..22]
SEN54_SCHPO - Probable tRNA-splicing endonuclease subunit sen54 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24... sen54 - tRNA-splicing endonuclease subunit Sen54	243.0	[0..16]	[276..40]
gi\|111064736 - gi\|111064736\|gb\|EAT85856.1\| hypothetical protein SNOG_07205 [Phaeosphaeria nodorum SN15]	232.0	[0..6]	[276..33]
gi\|114195627, gi... - gi\|115388075\|ref\|XP_001211543.1\| conserved hypothetical protein [Aspergillus terreus NIH2624], gi\|11...	232.0	[0..14]	[279..43]
gi\|70992187, gi\|... - gi\|70992187\|ref\|XP_750942.1\| tRNA splicing endonuclease subunit (Sen54) [Aspergillus fumigatus Af293...	232.0	[0..14]	[279..45]
gi\|83768654 - gi\|83768654\|dbj\|BAE58791.1\| unnamed protein product [Aspergillus oryzae] gi\|169772649 - gi\|169772649\|ref\|XP_001820793.1\| hypothetical protein [Aspergillus oryzae RIB40]	230.0	[0..14]	[279..45]
SE54_ASHGO, SEN5... - tRNA-splicing endonuclease subunit SEN54 OS=Ashbya gossypii GN=SEN54 PE=3 SV=1, (Q74ZJ5) tRNA-splici... SEN54_ASHGO - tRNA-splicing endonuclease subunit SEN54 OS=Ashbya gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9...	223.0	[0..8]	[275..33]

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Predicted Domain #1

Region A:
Residues: [1-76]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPKPTRAVDH RRRRSGRAPA IAAVAVAAED DGEEHHLNPF LDAAPSSSSS RVQFRKVASR  60
   61 AVWLEEAGAA EVVDSK

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [77-214]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GKLWLTTGVN RDGKLYYNVE EIGFLAERGA LVLLDYEGET IGMEEIYGKI AGGKYGCSWD  60
   61 AFQAYKHLKL LGYIIGRYGV PWTVKRSHTY SVTDASTSVV ETDQIQSLNR VGGASNDITK 120
  121 LLKEMCIDDM HPSFEVYL

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	24.0
Match:	1a79A
Description:	tRNA splicing endonuclease, C-terminal domain; tRNA splicing endonuclease EdnA, N-terminal domain
Matching Structure (courtesy of the PDB):

Predicted Domain #3

Region A:
Residues: [215-280]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PNSKFKKTSP GDPSFVLCLL SNKPPSREEL ETVENKFEGI PLKFCHVDNG RVSFLSSNKA  60
   61 ALPSLP

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

		MCM Score	GO Score	GO Term	SCOP Match	SCOP Description
View	Download	0.819	N/A	N/A	d.58.36	Sulfite reductase, domains 1 and 3

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits