| Protein: | gi|215706480, gi... |
| Organism: | Oryza sativa Japonica Group |
| Length: | 280 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|215706480, gi....
| Description | E-value | Query Range |
Subject Range |
|
|
265.0 | [0..13] | [279..3] |
|
|
259.0 | [0..3] | [280..22] |
|
|
243.0 | [0..16] | [276..40] |
|
|
232.0 | [0..6] | [276..33] |
|
|
232.0 | [0..14] | [279..43] |
|
|
232.0 | [0..14] | [279..45] |
|
|
230.0 | [0..14] | [279..45] |
|
|
223.0 | [0..8] | [275..33] |
|
Region A: Residues: [1-76] |
1 11 21 31 41 51
| | | | | |
1 MPKPTRAVDH RRRRSGRAPA IAAVAVAAED DGEEHHLNPF LDAAPSSSSS RVQFRKVASR 60
61 AVWLEEAGAA EVVDSK
|
| Detection Method: |  |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
| MCM Score |
SCOP Match |
SCOP Description | ||
| View | Download | 0.713 | a.80.1 | DNA polymerase III clamp loader subunits, C-terminal domain |
| View | Download | 0.630 | a.4.12 | TrpR-like |
| View | Download | 0.629 | a.118.11 | Cytochrome c oxidase subunit E |
| View | Download | 0.626 | a.64.1 | Saposin |
| View | Download | 0.621 | a.4.5 | "Winged helix" DNA-binding domain |
|
Region A: Residues: [77-214] |
1 11 21 31 41 51
| | | | | |
1 GKLWLTTGVN RDGKLYYNVE EIGFLAERGA LVLLDYEGET IGMEEIYGKI AGGKYGCSWD 60
61 AFQAYKHLKL LGYIIGRYGV PWTVKRSHTY SVTDASTSVV ETDQIQSLNR VGGASNDITK 120
121 LLKEMCIDDM HPSFEVYL
|
| Detection Method: | |
| Confidence: | 24.0 |
| Match: | 1a79A |
| Description: | tRNA splicing endonuclease, C-terminal domain; tRNA splicing endonuclease EdnA, N-terminal domain |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [215-280] |
1 11 21 31 41 51
| | | | | |
1 PNSKFKKTSP GDPSFVLCLL SNKPPSREEL ETVENKFEGI PLKFCHVDNG RVSFLSSNKA 60
61 ALPSLP
|
| Detection Method: | |
Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.
| MCM Score |
GO Score |
GO Term |
SCOP Match |
SCOP Description | ||
| View | Download | 0.819 | N/A | N/A | d.58.36 | Sulfite reductase, domains 1 and 3 |
| View | Download | 0.779 | N/A | N/A | d.74.2 | C-terminal domain of arginine repressor |
| View | Download | 0.779 | N/A | N/A | d.74.2 | C-terminal domain of arginine repressor |
| View | Download | 0.742 | N/A | N/A | d.68.7 | R3H domain |
| View | Download | 0.742 | N/A | N/A | d.68.7 | R3H domain |
| View | Download | 0.715 | N/A | N/A | d.58.7 | RNA-binding domain, RBD |
| View | Download | 0.711 | N/A | N/A | d.58.7 | RNA-binding domain, RBD |
| View | Download | 0.638 | N/A | N/A | d.58.17 | Metal-binding domain |
| View | Download | 0.616 | N/A | N/A | d.58.7 | RNA-binding domain, RBD |
