YRC Public Data Repository - Protein Structure Prediction

Protein:	CET1_SCHPO
Organism:	Schizosaccharomyces pombe 972h-
Length:	303 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CET1_SCHPO.

Description	E-value	Query Range	Subject Range
gi\|42554003, gi\|... - gi\|46126241\|ref\|XP_387674.1\| hypothetical protein FG07498.1 [Gibberella zeae PH-1], gi\|42554003\|gb\|E...	325.0	[0..45]	[301..562]
gi\|28919346, gi\|... - gi\|32423407\|ref\|XP_332141.1\| hypothetical protein [Neurospora crassa], gi\|28919346\|gb\|EAA28799.1\| pr... gi\|85089627 - gi\|85089627\|ref\|XP_958035.1\| hypothetical protein NCU09449 [Neurospora crassa OR74A]	319.0	[0..45]	[300..758]
gi\|49087900, gi\|... - gi\|67522481\|ref\|XP_659301.1\| hypothetical protein AN1697.2 [Aspergillus nidulans FGSC A4], ref\|XP_40...	317.0	[0..45]	[300..470]
gi\|39976167, gi\|... - gi\|39976167\|ref\|XP_369474.1\| hypothetical protein MG05990.4 [Magnaporthe grisea 70-15], gb\|EAA52862....	306.0	[0..45]	[299..280]
gi\|6730263, gi\|6... - gi\|6730268\|pdb\|1D8I\|C Chain C, X-Ray Crystal Structure Of Yeast Rna Triphosphatase In Complex With A...	305.0	[0..43]	[303..29]
CET1_ASHGO - mRNA-capping enzyme subunit beta OS=Ashbya gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 / NR... CET1_ASHGO - mRNA-capping enzyme subunit beta OS=Ashbya gossypii GN=CET1 PE=3 SV=1	293.0	[0..43]	[303..196]
gi\|159125112 - gi\|159125112\|gb\|EDP50229.1\| mRNA capping nucleoside-triphosphatase, putative [Aspergillus fumigatus ... gi\|66849609, gi\|... - gi\|70994268\|ref\|XP_751975.1\| mRNA capping nucleoside-triphosphatase [Aspergillus fumigatus Af293], g...	291.0	[0..45]	[300..497]
gi\|83769084 - gi\|83769084\|dbj\|BAE59221.1\| unnamed protein product [Aspergillus oryzae] gi\|169773509 - gi\|169773509\|ref\|XP_001821223.1\| hypothetical protein [Aspergillus oryzae RIB40]	283.0	[0..45]	[300..455]

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Predicted Domain #1

Region A:
Residues: [1-303]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDLKGLLHEE NELPSIEKRK IDENAVEHDK VERKRTKSVA VPKIEMNFLN KPIVPDTTKV  60
   61 ISNFLTHYLI TEPVEHVEIE AKLGTLIDLE TQNRFEFPVM NETILNPEFN LRTRFESDMT 120
  121 ASEHKYLNEF LNQAFRDSQK PGRLPFAYKH TKQVDLFYET EDNSRDKIRV SKNQSDNQVL 180
  181 ACVKKRRVAD LFLYCPNDAF DIRISISDEL PVSMPSGNQQ PSLTRLKDRV GYVHQEIKID 240
  241 LTKTTQNDPV YDTTERHELE VEFGNIADLR DRAQKAKDGM EAPLFRRVQL FMDNVRILRR 300
  301 EHS

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	83.09691
Match:	1d8hA
Description:	mRNA triphosphatase CET1
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
polynucleotide 5'-phosphatase activity	11.2864202061301	bayes_pls_golite062009
nucleotide phosphatase activity	5.10806075014632	bayes_pls_golite062009
binding	1.32114964285132	bayes_pls_golite062009
catalytic activity	1.17990683373825	bayes_pls_golite062009
hydrolase activity	0.487109994827608	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: