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View Structure Prediction Details

Protein: CE40355
Organism: Caenorhabditis elegans
Length: 789 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CE40355.

Description E-value Query
Range
Subject
Range
CE40354 - status:Partially_confirmed UniProt:Q19426 protein_id:CAL36499.1
676.0 [0..1] [789..1]

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Predicted Domain #1
Region A:
Residues: [1-60]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MHQPSRRRRP PREVERPSAT IRYEPVAEPE PWCSFCSWDL ILILLVMLGA GCFILLHLYL  60
   61 

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [61-129]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 YPNLEKVAPL PNIDPENAPY TWGTYRPHMY FGLRTRSPMS PLFGMMWYEQ PNTIQRPHIR  60
   61 HWCNQDDRL

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [130-789]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PGYYWYEADG RHFGKQNISE AHKGVIQTDW INDANGFAAR VKLNMAPGRR YNVILYLSAQ  60
   61 EIGTRFRLGK HLSDVFHGYN ELLGKFTMSL RLKDNTKLQT SHSVMLTDEK IPIDRYHDFV 120
  121 VDNTQAYNAP NQPLNYILNE KHNDEEGKFI AVQLNLGSQA EFDIILQTEK LKGMKPEEFT 180
  181 NILRIRSYNF NKKYENVFQL AGKNYTKTQL KMAKVSLSNM LGSVGYWYGH NRVLFNGIVQ 240
  241 PYGPHVLFSA VPSRPFFPRG FLWDEGFHQM LIRKMDSKMT LEAIASWMNA MDTSGWIPRE 300
  301 MIVGSEAEAK VPAEFIPQKN DVANPPTLFY VMDKLVNDEK TVGRYAGILK LLYPRLEKWF 360
  361 HWIRITQSGP TRTTYRWRGR NETIKTELNP KTLSSGLDDF PRASHPSDLE YHLDLRCWLA 420
  421 LASRVLNRLA KSYGTDADYQ RTAKAMEELN NFDSLVKDHW SEEAQGFFDY GKHSFDVALS 480
  481 PVPTPGSPRQ FEYQRVTSRA PSYTLVSDAF GYNNLFPMML KLIPSKSPIL KSMLDKIRDP 540
  541 KILWTNYGLR SISRSSPYYM ARNTEHDPPY WRGYIWINVN YMVLSSLRHY ADQPGPYREN 600
  601 AENIFSELRA NLVKNLATQF QKTGFLWENY DDRTGEGRGC HPFTGWSSLI LLIMSDNLDT 660
  661 

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 38.69897
Match: 1v7vA
Description: Crystal structure of Vibrio proteolyticus chitobiose phosphorylase
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
mannosidase activity 1.49291191891452 bayes_pls_golite062009
mannosyl-oligosaccharide mannosidase activity 1.2451852965943 bayes_pls_golite062009
binding 1.09154723976574 bayes_pls_golite062009
hydrolase activity, hydrolyzing O-glycosyl compounds 1.06639948523809 bayes_pls_golite062009
catalytic activity 0.770933849734279 bayes_pls_golite062009
racemase and epimerase activity, acting on carbohydrates and derivatives 0.68102716507433 bayes_pls_golite062009
racemase and epimerase activity 0.473636146090495 bayes_pls_golite062009
hydrolase activity, acting on glycosyl bonds 0.46543608238103 bayes_pls_golite062009
trehalase activity 0.389375574251869 bayes_pls_golite062009
protein binding 0.211409325631147 bayes_pls_golite062009
alpha,alpha-trehalase activity 0.17719034423607 bayes_pls_golite062009
isomerase activity 0.106573908779409 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
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