YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Structure Prediction Details

Protein: CE40165
Organism: Caenorhabditis elegans
Length: 609 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



[What does the above image mean?]


[Show Ginzu Version Information]


Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CE40165.

Description E-value Query
Range		 Subject
Range
GPDM_BOVIN - Glycerol-3-phosphate dehydrogenase, mitochondrial OS=Bos taurus GN=GPD2 PE=2 SV=1
 435.0 [0..1] [608..1]

Back

Predicted Domain #1
Region A:
Residues: [1-609] 
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MISRLLLQKS GILALGATAA STVAVWQTRT GFSKIREAPT GSTPGSLPTR ESIIESLKTE  60
   61 KRFDVLVIGG GSAGAGVALD AQTRGLKTAM VEYGDYCSGT SSKSSKLLHG GVKYLETALK 120
  121 EFDYEHYQIV QEGLNERLNI MKSAPFLSQT FPVLVPTYKW WQKIYYWGGV KVYDFLAGKN 180
  181 VLKPSKFVSK EEAIEICPTI RQEGLKGAML YYDGQGNDAR LVLVVALTAI RNGAKCVNHT 240
  241 ECIGLLKDSY GKVNGALVKD HISGETYEIH SKVVVNATGP FNDHIREMAD ETRNKIIVGS 300
  301 SGIHLTVAKY FCPGNAGLIV PKSSDGRVIF AFPWENVTIV GTTDDPTEPS HSPTVTEKEI 360
  361 QYILKEMNRA FEKEYEIKRE DVTSIWSGIR GLVQDPKRQK EHNSLARGHL VDVGPTGLIT 420
  421 IAGGKLTTFR HMAEETVNKL LDINKILEAQ PCVTRGMMFE GAHNYTSMLY RTISQNYGIE 480
  481 EQVATHLCQT YGDKVYEVLK LCKSTGQKFP VIGHRLHPDF PFLEAEVRYA VKEYARIPAD 540
  541 ILARRTRLSL LDARAARQVL PRIVAIMAEE LKWSPSEQIF YFDEGMKFLK VENGSVQSWK 600
  601 KEHSGVELP

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 41.221849
Match: 1pj5A
Description: Crystal structure of dimethylglycine oxidase of Arthrobacter globiformis in complex with acetate
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
oxidoreductase activity, acting on NADH or NADPH 5.26950448055146 bayes_pls_golite062009
oxidoreductase activity 2.3417445147889 bayes_pls_golite062009
oxidoreductase activity, acting on the CH-NH group of donors, quinone or similar compound as acceptor 2.25002926602325 bayes_pls_golite062009
electron-transferring-flavoprotein dehydrogenase activity 1.55451764082771 bayes_pls_golite062009
oxidoreductase activity, acting on sulfur group of donors, NAD or NADP as acceptor 1.45104542724719 bayes_pls_golite062009
transporter activity 1.29839290134235 bayes_pls_golite062009
oxidoreductase activity, acting on sulfur group of donors 1.18990628739838 bayes_pls_golite062009
antioxidant activity 1.12347155061135 bayes_pls_golite062009
oxidoreductase activity, acting on the CH-NH2 group of donors, oxygen as acceptor 1.08975609376408 bayes_pls_golite062009
transmembrane transporter activity 1.07862908893913 bayes_pls_golite062009
catalytic activity 1.03127962968326 bayes_pls_golite062009
oxidoreductase activity, acting on the CH-NH2 group of donors 0.955909900559292 bayes_pls_golite062009
binding 0.850689563354756 bayes_pls_golite062009
substrate-specific transporter activity 0.811783414198063 bayes_pls_golite062009
dihydrolipoyl dehydrogenase activity 0.69501605197281 bayes_pls_golite062009
NADPH-adrenodoxin reductase activity 0.573803337547311 bayes_pls_golite062009
substrate-specific transmembrane transporter activity 0.55964362614766 bayes_pls_golite062009
pyruvate dehydrogenase activity 0.494423552127166 bayes_pls_golite062009
oxidoreductase activity, acting on the CH-NH group of donors 0.442625746935807 bayes_pls_golite062009
protein binding 0.370064403093958 bayes_pls_golite062009
ion transmembrane transporter activity 0.262741975112034 bayes_pls_golite062009
hydrogen ion transmembrane transporter activity 0.224438371728402 bayes_pls_golite062009
monovalent inorganic cation transmembrane transporter activity 0.164825358655637 bayes_pls_golite062009
nucleic acid binding 0.162130833238942 bayes_pls_golite062009
amine oxidase activity 0.0576694782267841 bayes_pls_golite062009
cation transmembrane transporter activity 0.057221373695437 bayes_pls_golite062009
DNA binding 0.022476246602636 bayes_pls_golite062009
YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle