| Protein: | kcnl-1 |
| Organism: | Caenorhabditis elegans |
| Length: | 680 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for kcnl-1.
| Description | E-value | Query Range |
Subject Range |
|
|
390.0 | [0..2] | [619..128] |
|
Region A: Residues: [1-499] |
1 11 21 31 41 51
| | | | | |
1 MSQKKSSGER RRRSELTNGH SVPNNRKTSC QVVGAPRRST LAPGSTALMA LSQFDSRRFS 60
61 TIDGPIALRR QSTKRRVIKS DPKQIIHIFT NPYDRYVNGG VRFDNDVIEE GTASGAASGG 120
121 VGTPKKIAGF RRRQSGYGIA ISSDSTAKMR CRLRKQLFIR RNKVCDISLF LAVLGLLLVI 180
181 IDSELTALSS STGITKDSPI SIILRSACVV STFFLICCLI NYHAIEVKIA LIDSGADDWR 240
241 VAFSTDRFIK MLIEVCVCMI CPFPEIFSDG LMKMPYINAD TRQVKMRDVP IDVLLSVPMF 300
301 LRSYLVCRFM VLHSKQFQDA ATRSIAALNR ISMDFRFVIK TMMADHPLRV LIVFTLSYWM 360
361 CMSWMFTQCE RYDGQLEVEH YYLNSMWFIM VTFMSIGYGD IVPNTYCGRC LSITTGIVGA 420
421 GVSSALIAII SRKLELSRAE KHVNNFMADS KLTNQRKNAA ASVLQETWFI HKYKKALHKG 480
481 DDLRLRHHQR RFLHSINEF
|
| Detection Method: |  |
| Confidence: | 55.39794 |
| Match: | 2a79B |
| Description: | Mammalian Shaker Kv1.2 potassium channel- beta subunit complex |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [500-680] |
1 11 21 31 41 51
| | | | | |
1 RRIKWDQRKL QEKGNSLLDV GKLHSDMHET LWEMHRTQDH FISQIDVLTQ KIMELQMTLN 60
61 TRPPCCAPPT SSSNDAYFST STQLGTVLPT VIPTIPLPPT QSPMLHASQS HREPLQVTTT 120
121 TTTSSDGLPR ISVGSTSSTA TSASSGNGSL PQCTVDQLSN CPTGGIYATV TTPLISNFEE 180
181 V
|
| Detection Method: | |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
