YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Structure Prediction Details

Protein: CE40021
Organism: Caenorhabditis elegans
Length: 713 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



[What does the above image mean?]


[Show Ginzu Version Information]


Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CE40021.

Description E-value Query
Range
Subject
Range
CE39479 - Human plasma-cell membrane glycoprotein PC-1 like status:Partially_confirmed UniProt:P90755 protein_...
388.0 [0..1] [713..31]

Back

Predicted Domain #1
Region A:
Residues: [1-467]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLSFIAGLVL LGLVAAATIS GSKNLPTAEY KWAGCENLGK CQIDGFSTPP LVILSFDGFA  60
   61 KEYLERRIVK SLELIAECGV KADRVYPSFP SKTFPNHYTM VTGLYPESHG ITDNYVFDPN 120
  121 LYPELLAMRK HEAKEFYQAE PIWSAYKRLT GNRVHCLFWV GCYYNITGYM PDVSPDYNQE 180
  181 LPLKERIDTL IGWLKLPETE RPALITAYLH EPDQAGHMQK NVNQELEEVN NYIDILMKAL 240
  241 HDENLLECVN LVIVSDHGMQ ALNNSIEVET IVNMDGLVLS KGVVARIHLN ETDRSIDEVA 300
  301 GEIRCKIDGV KVNTINDIPL RKHYSKSKRV GDIIIEGKPG TSFYKSETNL GDHGYDYHNE 360
  361 NMHTVMFARG PSFLQNVTVP SFQNVQYMNL WLYLLGLEGT VDNNGTIGFF DSILKNPPIR 420
  421 ENKWDSMEEC LNFGSAEVLQ CDKAEGHDLK KLSLHLENCK EHQNLPI

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 48.522879
Match: 2gsnA
Description: No description for 2gsnA was found.

Predicted Domain #2
Region A:
Residues: [468-713]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 YSKNNCFQSY CENSLIIHKN RQDVRKGVIE SLTFSFSRNQ SVFENSFSFV NTKYSIECPK  60
   61 LDTKDNFFTA GSEAISKLAN AQYKFPSSFM KSELISSLLS LKDETIKFVD IWVPLSIKTD 120
  121 EYLKHYGKLF VLSGLAVDRN LDGIADDEES KEPTHFYRIL ITCTGNWLST NPPLCKKYSD 180
  181 TKALAFVFPI LNKKTTMDCM DSDAILLDYT STIEDVENIA SFQFQIGALS HQQNVYLRRN 240
  241 ITTSLW

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 39.69897
Match: 2o3bA
Description: No description for 2o3bA was found.

Predicted functions:

Term Confidence Notes
deoxyribonuclease activity 2.92550377520129 bayes_pls_golite062009
endodeoxyribonuclease activity 2.12968677822082 bayes_pls_golite062009
nuclease activity 1.67614365360206 bayes_pls_golite062009
binding 1.46663316292334 bayes_pls_golite062009
hydrolase activity, acting on ester bonds 1.35290345812147 bayes_pls_golite062009
nucleic acid binding 1.32069971596699 bayes_pls_golite062009
hydrolase activity 1.29111119519642 bayes_pls_golite062009
DNA binding 1.27448613694343 bayes_pls_golite062009
catalytic activity 1.0342182748198 bayes_pls_golite062009
endonuclease activity 0.801381411877942 bayes_pls_golite062009
protein binding 0.556107803418262 bayes_pls_golite062009
endodeoxyribonuclease activity, producing 5'-phosphomonoesters 0.397835873895756 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle