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View Structure Prediction Details

Protein: NSMCE2
Organism: Homo sapiens
Length: 247 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for NSMCE2.

Description E-value Query
Range		 Subject
Range
NSE2_RAT - E3 SUMO-protein ligase NSE2 OS=Rattus norvegicus GN=Nsmce2 PE=2 SV=1
 1.0E-50 [1..247] [1..247]
gi|16552560 - gi|16552560|dbj|BAB71338.1| unnamed protein product [Homo sapiens]
 2.0E-46 [1..247] [1..247]
gi|21312038, gi|... - gi|21312038|ref|NP_081022.1| non-SMC element 2, MMS21 homolog [Mus musculus], gi|12834505|dbj|BAB229...
 2.0E-43 [1..247] [1..247]
NSE2_BOVIN - E3 SUMO-protein ligase NSE2 OS=Bos taurus GN=NSMCE2 PE=2 SV=1
 7.0E-40 [15..245] [17..247]
NSE2_XENLA - E3 SUMO-protein ligase NSE2 OS=Xenopus laevis GN=nsmce2 PE=2 SV=1
 6.0E-37 [11..245] [5..238]
PUB13_ARATH - U-box domain-containing protein 13 OS=Arabidopsis thaliana GN=PUB13 PE=1 SV=1
 4.0E-33 [11..242] [99..326]
SL11_ORYSI - Protein spotted leaf 11 OS=Oryza sativa subsp. indica GN=SPL11 PE=1 SV=2
SPL11_ORYSA - Spotted leaf protein 11 (Spotted leaf11) (Cell death-related protein SPL11) - Oryza sativa (Rice)
SL11_ORYSJ - E3 ubiquitin-protein ligase SPL11 OS=Oryza sativa subsp. japonica GN=SPL11 PE=1 SV=2
 5.0E-30 [18..242] [128..343]
gi|77556856 - gi|77556856|gb|ABA99652.1| Spotted leaf protein 11, putative, expressed [Oryza sativa (japonica cult...
 5.0E-30 [18..242] [9..224]

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Predicted Domain #1
Region A:
Residues: [1-155] 
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPGRSSSNSG STGFISFSGV ESALSSLKNF QACINSGMDT ASSVALDLVE SQTEVSSEYS  60
   61 MDKAMVEFAT LDRQLNHYVK AVQSTINHVK EERPEKIPDL KLLVEKKFLA LQSKNSDADF 120
  121 QNNEKFVQFK QQLKELKKQC GLQADREADG TEGVD

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [156-247] 
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 EDIIVTQSQT NFTCPITKEE MKKPVKNKVC GHTYEEDAIV RMIESRQKRK KKAYCPQIGC  60
   61 SHTDIRKSDL IQDEALRRAI ENHNKKRHRH SE

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 15.39794
Match: 2yu4A
Description: No description for 2yu4A was found.
YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle