| Protein: | gi|2827203, gi|1... |
| Organism: | Homo sapiens |
| Length: | 978 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|2827203, gi|1....
| Description | E-value | Query Range |
Subject Range |
|
|
0.0 | [1..978] | [1..978] |
|
|
0.0 | [1..978] | [1..979] |
|
|
0.0 | [1..978] | [1..998] |
|
|
0.0 | [1..978] | [1..979] |
|
|
0.0 | [1..978] | [1..979] |
|
|
0.0 | [1..978] | [1..979] |
|
Region A: Residues: [1-18] |
1 11 21 31 41 51
| | | | | |
1 MAQVAMSTLP VEDEESSE
|
| Detection Method: |  |
Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.
|
Region A: Residues: [19-95] |
1 11 21 31 41 51
| | | | | |
1 SRMVVTFLMS ALESMCKELA KSKAEVACIA VYETDVFVVG TERGRAFVNT RKDFQKDFVK 60
61 YCVEEEEKAA EMHKMKS
|
| Detection Method: | |
Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.
| MCM Score |
GO Score |
GO Term |
SCOP Match |
SCOP Description | ||
| View | Download | 0.653 | N/A | N/A | d.88.1 | SRF-like |
| View | Download | 0.645 | N/A | N/A | d.88.1 | SRF-like |
| View | Download | 0.619 | N/A | N/A | d.88.1 | SRF-like |
| View | Download | 0.618 | N/A | N/A | d.88.1 | SRF-like |
| View | Download | 0.617 | N/A | N/A | d.88.1 | SRF-like |
|
Region A: Residues: [96-196] |
1 11 21 31 41 51
| | | | | |
1 TTQANRMSVD AVEIETLRKT VEDYFCFCYG KALGKSTVVP VPYEKMLRDQ SAVVVQGLPE 60
61 GVAFKHPENY DLATLKWILE NKAGISFIIK RPFLEPKKHV G
|
| Detection Method: | |
| Confidence: | 38.045757 |
| Match: | 2d9bA |
| Description: | No description for 2d9bA was found. |
|
Region A: Residues: [197-262] |
1 11 21 31 41 51
| | | | | |
1 GRVMVTDADR SILSPGGSCG PIKVKTEPTE DSGISLEMAA VTVKEESEDP DYYQYNIQGS 60
61 HHSSEG
|
| Detection Method: | |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.
|
Region A: Residues: [263-469] |
1 11 21 31 41 51
| | | | | |
1 NEGTEMEVPA EDSTQHVPSE TSEDPEVEVT IEDDDYSPPS KRPKANELPQ PPVPEPANAG 60
61 KRKVREFNFE KWNARITDLR KQVEELFERK YAQAIKAKGP VTIPYPLFQS HVEDLYVEGL 120
121 PEGIPFRRPS TYGIPRLERI LLAKERIRFV IKKHELLNST REDLQLDKPA SGVKEEWYAR 180
181 ITKLRKMVDQ LFCKKFAEAL GSTEAKA
|
| Detection Method: | |
| Confidence: | 30.69897 |
| Match: | 2dn4A |
| Description: | No description for 2dn4A was found. |
|
Region A: Residues: [470-539] |
1 11 21 31 41 51
| | | | | |
1 VPYQKFEAHP NDLYVEGLPE NIPFRSPSWY GIPRLEKIIQ VGNRIKFVIK RPELLTHSTT 60
61 EVTQPRTNTP
|
| Detection Method: | |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
| MCM Score |
SCOP Match |
SCOP Description | ||
| View | Download | 0.310 | c.23.1 | CheY-like |
| View | Download | 0.439 | d.58.5 | GlnB-like |
| View | Download | 0.286 | c.31.1 | DHS-like NAD/FAD-binding domain |
| View | Download | 0.273 | d.109.1 | Actin depolymerizing proteins |
| View | Download | 0.283 | c.52.2 | tRNA splicing endonuclease, C-terminal domain |
|
Region A: Residues: [540-705] |
1 11 21 31 41 51
| | | | | |
1 VKEDWNVRIT KLRKQVEEIF NLKFAQALGL TEAVKVPYPV FESNPEFLYV EGLPEGIPFR 60
61 SPTWFGIPRL ERIVRGSNKI KFVVKKPELV ISYLPPGMAS KINTKALQSP KRPRSPGSNS 120
121 KVPEIEVTVE GPNNNNPQTS AVRTPTQTNG SNVPFKPRGR EFSFEA
|
| Detection Method: | |
| Confidence: | 5.59 |
| Match: | 2ed2A |
| Description: | No description for 2ed2A was found. |
|
Region A: Residues: [706-804] |
1 11 21 31 41 51
| | | | | |
1 WNAKITDLKQ KVENLFNEKC GEALGLKQAV KVPFALFESF PEDFYVEGLP EGVPFRRPST 60
61 FGIPRLEKIL RNKAKIKFII KKPEMFETAI KESTSSKSP
|
| Detection Method: | |
| Confidence: | 25.154902 |
| Match: | 1q60A |
| Description: | Solution Structure of RSGI RUH-004, a GTF2I domain in Mouse cDNA |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| transcription regulator activity | 4.31986990828723 | bayes_pls_golite062009 |
| general RNA polymerase II transcription factor activity | 4.02258915980722 | bayes_pls_golite062009 |
| DNA binding | 4.01598187073916 | bayes_pls_golite062009 |
| nucleic acid binding | 3.9329721501879 | bayes_pls_golite062009 |
| transcription factor activity | 3.83217404681534 | bayes_pls_golite062009 |
| binding | 3.0325775548747 | bayes_pls_golite062009 |
| RNA polymerase II transcription factor activity | 2.76277877142766 | bayes_pls_golite062009 |
| protein binding | 1.48651016577672 | bayes_pls_golite062009 |
| RNA polymerase II transcription factor activity, enhancer binding | 0.91960306002172 | bayes_pls_golite062009 |
| mitogen-activated protein kinase binding | 0.245342655759921 | bayes_pls_golite062009 |
|
Region A: Residues: [805-978] |
1 11 21 31 41 51
| | | | | |
1 PRKINSSPNV NTTASGVEDL NIIQVTIPDD DNERLSKVEK ARQLREQVND LFSRKFGEAI 60
61 GMGFPVKVPY RKITINPGCV VVDGMPPGVS FKAPSYLEIS SMRRILDSAE FIKFTVIRPF 120
121 PGLVINNQLV DQSESEGPVI QESAEPSQLE VPATEEIKET DGSSQIKQEP DPTW
|
| Detection Method: | |
| Confidence: | 41.69897 |
| Match: | 2ejeA |
| Description: | No description for 2ejeA was found. |
