| Protein: | RSC30 |
| Organism: | Saccharomyces cerevisiae |
| Length: | 883 amino acids |
| Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RSC30.
| Description | E-value | Query Range |
Subject Range |
|
|
0.0 | [1..883] | [1..883] |
|
|
0.0 | [2..882] | [3..808] |
|
|
3.0E-22 | [77..289] | [823..1038] |
|
|
3.0E-21 | [25..304] | [301..584] |
|
|
1.0E-19 | [6..260] | [44..309] |
|
Region A: Residues: [1-92] |
1 11 21 31 41 51
| | | | | |
1 MMDMQVRKVR KPPACTQCRK RKIGCDRAKP ICGNCVKYNK PDCFYPDGPG KMVAVPSASG 60
61 MSTHGNGQGS NHFSQGNGVN QKNVMIQTQY PI
|
| Detection Method: |  |
| Confidence: | 6.09691 |
| Match: | 1pyiA_ |
| Description: | PPR1 |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| transcription regulator activity | 4.56444258780502 | bayes_pls_golite062009 |
| DNA binding | 4.26146437716972 | bayes_pls_golite062009 |
| nucleic acid binding | 4.17369933547911 | bayes_pls_golite062009 |
| transcription factor activity | 3.049435548132 | bayes_pls_golite062009 |
| RNA polymerase II transcription factor activity | 2.93914501897006 | bayes_pls_golite062009 |
| binding | 2.91929847152301 | bayes_pls_golite062009 |
| specific RNA polymerase II transcription factor activity | 2.44382866473054 | bayes_pls_golite062009 |
| sequence-specific DNA binding | 1.87955444697212 | bayes_pls_golite062009 |
| transcription activator activity | 0.915626626047549 | bayes_pls_golite062009 |
|
Region A: Residues: [93-342] |
1 11 21 31 41 51
| | | | | |
1 MQTSIEAFNF SFNPSVDTAM QWTKAASYQN NNTNNNTAPR QNSSTVSSNV HGNTIVRSDS 60
61 PDVPSMDQIR EYNTRLQLVN AQSFDYTDNP YSFNVGINQD SAVFDLMTSP FTQEEVLIKE 120
121 IDFLKNKLLD LQSLQLKSLK EKSNLNADNT TANKINKTGE NSKKGKVDGK RAGFDHQTSR 180
181 TSQSSQKYFT ALTITDVQSL VQVKPLKDTP NYLFTKNFII FRDHYLFKFY NILHDICHIN 240
241 QFKVSPPNNK
|
| Detection Method: | |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.
|
Region A: Residues: [343-539] |
1 11 21 31 41 51
| | | | | |
1 NHQQYMEVCK VNFPPKAIII ETLNSESLNN LNIEEFLPIF DKTLLLEFVH NSFPNGDTCP 60
61 SFSTVDLPLS QLTKLGELTV LLLLLNDSMT LFNKQAINNH VSALMNNLRL IRSQITLINL 120
121 EYYDQETIKF IAITKFYESL YMHDDHKSSL DEDLSCLLSF QIKDFKLFHF LKKMYYSRHS 180
181 LLGQSSFMVP AAENLSP
|
| Detection Method: | |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.
|
Region A: Residues: [540-600] |
1 11 21 31 41 51
| | | | | |
1 IPASIDTNDI PLIANDLKLL ETQAKLINIL QGVPFYLPVN LTKIESLLET LTMGVSNTVD 60
61 L
|
| Detection Method: | |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
| MCM Score |
SCOP Match |
SCOP Description | ||
| View | Download | 0.676 | c.13.2 | Anti-sigma factor antagonist SpoIIaa |
| View | Download | 0.570 | b.34.8 | Fumarylacetoacetate hydrolase, FAH, N-terminal domain |
| View | Download | 0.550 | a.142.1 | PTS-regulatory domain, PRD |
| View | Download | 0.540 | d.79.1 | YjgF-like |
| View | Download | 0.522 | d.122.1 | ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase |
|
Region A: Residues: [601-883] |
1 11 21 31 41 51
| | | | | |
1 YFHDNEVRKE WKDTLNFINT IVYTNFFLFV QNESSLSMAV QHSSNNNKTS NSERCAKDLM 60
61 KIISNMHIFY SITFNFIFPI KSIKSFSSGN NRFHSNGKEF LFANHFIEIL QNFIAITFAI 120
121 FQRCEVILYD EFYKNLSNEE INVQLLLIHD KILEILKKIE IIVSFLRDEM NSNGSFKSIK 180
181 GFNKVLNLIK YMLRFSKKKQ NFARNSDNNN VTDYSQSAKN KNVLLKFPVS ELNRIYLKFK 240
241 EISDFLMERE VVQRSIIIDK DLESDNLGIT TANFNDFYDA FYN
|
| Detection Method: | |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.
