YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Structure Prediction Details

Protein: YBR074W
Organism: Saccharomyces cerevisiae
Length: 976 amino acids
Reference: Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076



[What does the above image mean?]


[Show Ginzu Version Information]


Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for YBR074W.

Description E-value Query
Range
Subject
Range
gi|44985658, gi|... - gi|45200888|ref|NP_986458.1| AGL209Wp [Ashbya gossypii ATCC 10895], gi|44985658|gb|AAS54282.1| AGL20...
PFF1_ASHGO - Vacuolar membrane protease OS=Ashbya gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1...
839.0 [0..1] [976..1]

Back

Predicted Domain #1
Region A:
Residues: [1-352]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKLKSVFRSV LKYRKTNLSL LLLITYSIIT LLYIFDHERY KLNLPKEDEH PEFNDLLETA  60
   61 WGDLQIITAS FHPYTSKEND KVHDYLLKRV LEITGNSSFA SVSDDKESER SILFQQQDPF 120
  121 NESSRFSRVT YFESSNILVK LEGKNPEEEG LLLSAHFDSV PTGYGATDDG MGVVSLLANL 180
  181 KYHIKHRPNR TLIFNFNNNE EFGLLGASTY FDHSWSNLTK YVINLEGTGA GGKAVLFRTS 240
  241 DTSTARIYQQ SVKENPFGNS IYQQGFYSRY VRSETDYKIY EENGMRGWDV AFYKPRNLYH 300
  301 TIKDSIQYTS KASLWHMLHT SLQLSAYVAS NSLDTADQTP ACYFDFIGLK FF

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 39.0
Match: 2ootA
Description: No description for 2ootA was found.

Predicted functions:

Term Confidence Notes
catalytic activity 1.3989281287879 bayes_pls_golite062009
peptidase activity 1.27773768680798 bayes_pls_golite062009
peptidase activity, acting on L-amino acid peptides 1.04982326392292 bayes_pls_golite062009
binding 0.427430529570567 bayes_pls_golite062009
transcription regulator activity 0.292505428315311 bayes_pls_golite062009
nucleic acid binding 0.288706193625513 bayes_pls_golite062009
exopeptidase activity 0.262148955584626 bayes_pls_golite062009
DNA binding 0.106664548435924 bayes_pls_golite062009

Predicted Domain #2
Region A:
Residues: [353-527]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 VISAKTLFYW NCIFLLVSPV VAIGLYLISR DRMTWKSYSW LSWTRFPLSL AAGIIVQKLF  60
   61 SNDIIRSNPL TFSRNYFWPI SAFFTQVIFT SYVLINCSNF FFPCADMKSL SIIELFIILW 120
  121 TILLFTSKLL YSSDYRYTGL YPLSIFFLLS TIAAILRLLA LALGMRTRKR LGREC

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [528-594]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 RDHHSNYSSH SQIDMERDGQ ENLEQPQDQL TSSQDDQASI QDDNVSTTSA GPSHNVDEDH  60
   61 GMDSSSQ

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #4
Region A:
Residues: [595-636]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 QHDERVPLLK GSNSMEEGLS TRENSLKLEY TDYAWIIQFL LI

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #5
Region A:
Residues: [637-782]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 VPIPSFILFN SVDVIMDALN HTVQEGSKAT FDVLRFGMVG SILIALPILP FFYKVNYITI  60
   61 SLTALLFLIS ASKTLLVHPF TNSNPLKVRF SQNIDLSQGN AASVHVLGRE GNFLKPMLQD 120
  121 LPSIKYSSTH INCTSVTNGM ELCMYD

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #6
Region A:
Residues: [783-976]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GMQPNLLSTN GNTNISSMVK VHVLHNNRNS TERSPYEPIV AELLLEVKEF RACTLTFESR  60
   61 HQAKSPVREI TVYQKKNSAP QKANITKTIK SASGINELQL HKLDFDQETY HIGVQWFPKL 120
  121 LTDGNVEDDK LGTKDELSVS ISCYWGEYDS ESVVNGTAVR KIPAFDELIN YAPLSFSFTN 180
  181 EQKGLVIVKD AIIL

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle