| Protein: | CTF4 |
| Organism: | Saccharomyces cerevisiae |
| Length: | 927 amino acids |
| Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CTF4.
| Description | E-value | Query Range |
Subject Range |
|
|
0.0 | [13..668] | [865..1491] |
|
|
0.0 | [47..670] | [1164..1767] |
|
|
0.0 | [11..698] | [545..1187] |
|
Region A: Residues: [1-348] |
1 11 21 31 41 51
| | | | | |
1 MVSVIDKLVF DFGGKTLVSL APDNNTLCVA NKNGLTKILK TNNPEEEPET LDSSKLVSSI 60
61 KCYSNSHFLM TTMQGDALRY NIDSSQEELL ARFALPLRDC CVIHSGKMAV FGGDDLELIL 120
121 LELDDETHKK HAIKIDEQVS QISYNSQMNI LAVSMINGKV QIFSLTSTIP NKVHELNDYI 180
181 VANSYDDTHR DKILSNMMDD IDKDNDNDLS ETADPDENNV ADPEFCAANR ICTRVAWHPK 240
241 GLHFALPCAD DTVKIFSIKG YSLQKTLSTN LSSTKAHFID LQFDPLRGTY IAAVDLNNKL 300
301 TVWNWETSEI HYTREFKRKI TNIAWKIQAD SKTLDLVLGT WSGSIAIV
|
| Detection Method: |  |
| Confidence: | 60.522879 |
| Match: | 1erjA_ |
| Description: | Tup1, C-terminal domain |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [349-468] |
1 11 21 31 41 51
| | | | | |
1 QNLAESVVSN IPDQSVAESS TKHGLFVDSE SDLENLEGND DINKSDKLFS DITQEANAED 60
61 VFTQTHDGPS GLSEKRKYNF EDEEDFIDDD DGAGYISGKK PHNEHSYSRV HKTHSFPISL 120
121
|
| Detection Method: | |
| Confidence: | 7.69897 |
| Match: | 1l0qA_ |
| Description: | Surface layer protein |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [469-538] |
1 11 21 31 41 51
| | | | | |
1 ANTGKFRYMP FSPAGTPFGF TDRRYLTMNE VGYVSTVKNS EQYSITVSFF DVGRFREYHF 60
61 EDLFGYDLCF
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
| MCM Score |
GO Score |
GO Term |
SCOP Match |
SCOP Description | ||
| View | Download | 0.803 | 0.011 | nuclear chromosome | b.34.5 | Translation proteins SH3-like domain |
|
Region A: Residues: [539-794] |
1 11 21 31 41 51
| | | | | |
1 LNEKGTLFGQ SKTGQIQYRP HDSIHSNWTK IIPLQAGERI TSVAATPVRV IVGTSLGYFR 60
61 SFNQFGVPFA VEKTSPIVAL TAQNYRVFSV HYSQFHGLSY SLSELGTSSK RYYKRECPLP 120
121 MSLPNINSDM KKDANLDYYN FNPMGIKSLF FSSYGDPCIF GSDNTLLLLS KWRSPEESKW 180
181 LPILDSNMEI WKMSGGKETT DIHVWPLALA YDTLNCILVK GKHIWPEFPL PLPSEMEIRM 240
241 PVFVKSKLLE ENKAIL
|
| Detection Method: | |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [795-927] |
1 11 21 31 41 51
| | | | | |
1 NKKNEIGADT EAEEGEEDKE IQIPVSMAAE EEYLRSKVLS ELLTDTLEND GEMYGNENEV 60
61 LAALNGAYDK ALLRLFASAC SDQNVEKALS LAHELKQDRA LTAAVKISER AELPSLVKKI 120
121 NNIREARYEQ QLK
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
| MCM Score |
GO Score |
GO Term |
SCOP Match |
SCOP Description | ||
| View | Download | 0.882 | 0.026 | nuclear chromosome | a.29.3 | Acyl-CoA dehydrogenase C-terminal domain-like |
