| Protein: | CTF4 |
| Organism: | Saccharomyces cerevisiae |
| Length: | 927 amino acids |
| Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CTF4.
| Description | E-value | Query Range |
Subject Range |
|
|
0.0 | [13..668] | [865..1491] |
|
|
0.0 | [47..670] | [1164..1767] |
|
|
0.0 | [11..698] | [545..1187] |
|
Region A: Residues: [1-348] |
1 11 21 31 41 51
| | | | | |
1 MVSVIDKLVF DFGGKTLVSL APDNNTLCVA NKNGLTKILK TNNPEEEPET LDSSKLVSSI 60
61 KCYSNSHFLM TTMQGDALRY NIDSSQEELL ARFALPLRDC CVIHSGKMAV FGGDDLELIL 120
121 LELDDETHKK HAIKIDEQVS QISYNSQMNI LAVSMINGKV QIFSLTSTIP NKVHELNDYI 180
181 VANSYDDTHR DKILSNMMDD IDKDNDNDLS ETADPDENNV ADPEFCAANR ICTRVAWHPK 240
241 GLHFALPCAD DTVKIFSIKG YSLQKTLSTN LSSTKAHFID LQFDPLRGTY IAAVDLNNKL 300
301 TVWNWETSEI HYTREFKRKI TNIAWKIQAD SKTLDLVLGT WSGSIAIV
|
| Detection Method: |  |
| Confidence: | 60.522879 |
| Match: | 1erjA_ |
| Description: | Tup1, C-terminal domain |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [349-468] |
1 11 21 31 41 51
| | | | | |
1 QNLAESVVSN IPDQSVAESS TKHGLFVDSE SDLENLEGND DINKSDKLFS DITQEANAED 60
61 VFTQTHDGPS GLSEKRKYNF EDEEDFIDDD DGAGYISGKK PHNEHSYSRV HKTHSFPISL 120
121
|
| Detection Method: | |
| Confidence: | 7.69897 |
| Match: | 1l0qA_ |
| Description: | Surface layer protein |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [469-538] |
1 11 21 31 41 51
| | | | | |
1 ANTGKFRYMP FSPAGTPFGF TDRRYLTMNE VGYVSTVKNS EQYSITVSFF DVGRFREYHF 60
61 EDLFGYDLCF
|
| Detection Method: | |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
| MCM Score |
GO Score |
GO Term |
SCOP Match |
SCOP Description | ||
| View | Download | 0.603 | 0.011 | nuclear chromosome | b.1.1 | Immunoglobulin |
| View | Download | 0.686 | 0.011 | nuclear chromosome | b.1.18 | E set domains |
| View | Download | 0.640 | 0.011 | nuclear chromosome | g.18.1 | Complement control module/SCR domain |
| View | Download | 0.803 | 0.011 | nuclear chromosome | b.34.5 | Translation proteins SH3-like domain |
| View | Download | 0.655 | 0.011 | nuclear chromosome | d.58.49 | YajQ-like |
| View | Download | 0.597 | 0.011 | nuclear chromosome | b.34.4 | Electron transport accessory proteins |
| View | Download | 0.513 | 0.011 | nuclear chromosome | b.1.3 | PKD domain |
| View | Download | 0.493 | 0.011 | nuclear chromosome | b.38.1 | Sm-like ribonucleoproteins |
| View | Download | 0.482 | 0.011 | nuclear chromosome | b.114.1 | N-utilization substance G protein NusG, insert domain |
| View | Download | 0.435 | 0.011 | nuclear chromosome | d.9.1 | Interleukin 8-like chemokines |
| View | Download | 0.428 | 0.011 | nuclear chromosome | d.40.1 | CI-2 family of serine protease inhibitors |
| View | Download | 0.418 | 0.011 | nuclear chromosome | b.34.5 | Translation proteins SH3-like domain |
| View | Download | 0.385 | 0.011 | nuclear chromosome | d.17.1 | Cystatin/monellin |
| View | Download | 0.376 | 0.011 | nuclear chromosome | d.50.1 | dsRNA-binding domain-like |
| View | Download | 0.375 | 0.011 | nuclear chromosome | d.17.1 | Cystatin/monellin |
| View | Download | 0.364 | 0.011 | nuclear chromosome | g.27.1 | Fibronectin type I module |
| View | Download | 0.350 | 0.011 | nuclear chromosome | d.129.1 | TATA-box binding protein-like |
| View | Download | 0.346 | 0.011 | nuclear chromosome | d.58.17 | Metal-binding domain |
| View | Download | 0.326 | 0.011 | nuclear chromosome | b.101.1 | Ribonuclease domain of colicin E3 |
| View | Download | 0.325 | 0.011 | nuclear chromosome | g.27.1 | Fibronectin type I module |
| View | Download | 0.320 | 0.011 | nuclear chromosome | g.14.1 | Kringle-like |
| View | Download | 0.308 | 0.011 | nuclear chromosome | d.1.1 | Microbial ribonucleases |
| View | Download | 0.294 | 0.011 | nuclear chromosome | d.129.1 | TATA-box binding protein-like |
| View | Download | 0.294 | 0.011 | nuclear chromosome | d.93.1 | SH2 domain |
| View | Download | 0.289 | 0.011 | nuclear chromosome | b.61.3 | D-aminopeptidase, middle and C-terminal domains |
| View | Download | 0.285 | 0.011 | nuclear chromosome | b.4.1 | HSP40/DnaJ peptide-binding domain |
| View | Download | 0.279 | 0.011 | nuclear chromosome | g.18.1 | Complement control module/SCR domain |
| View | Download | 0.277 | 0.011 | nuclear chromosome | b.58.1 | PK beta-barrel domain-like |
| View | Download | 0.256 | 0.011 | nuclear chromosome | d.17.1 | Cystatin/monellin |
| View | Download | 0.254 | 0.011 | nuclear chromosome | c.51.1 | Anticodon-binding domain of Class II aaRS |
| View | Download | 0.254 | 0.011 | nuclear chromosome | b.1.1 | Immunoglobulin |
| View | Download | 0.253 | 0.011 | nuclear chromosome | g.14.1 | Kringle-like |
| View | Download | 0.253 | 0.011 | nuclear chromosome | d.16.1 | FAD-linked reductases, C-terminal domain |
| View | Download | 0.242 | 0.011 | nuclear chromosome | c.30.1 | PreATP-grasp domain |
| View | Download | 0.229 | 0.011 | nuclear chromosome | b.61.4 | Quinohemoprotein amine dehydrogenase A chain, domain 3 |
| View | Download | 0.224 | 0.011 | nuclear chromosome | d.93.1 | SH2 domain |
| View | Download | 0.218 | 0.011 | nuclear chromosome | c.47.2 | RNA 3'-terminal phosphate cyclase, RPTC, insert domain |
| View | Download | 0.216 | 0.011 | nuclear chromosome | b.1.1 | Immunoglobulin |
| View | Download | 0.216 | 0.011 | nuclear chromosome | b.58.1 | PK beta-barrel domain-like |
| View | Download | 0.216 | 0.011 | nuclear chromosome | d.93.1 | SH2 domain |
| View | Download | 0.210 | 0.011 | nuclear chromosome | d.199.1 | DNA-binding C-terminal domain of the transcription factor MotA |
| View | Download | 0.207 | 0.011 | nuclear chromosome | d.233.1 | Inhibitor of vertebrate lysozyme, Ivy |
|
Region A: Residues: [539-794] |
1 11 21 31 41 51
| | | | | |
1 LNEKGTLFGQ SKTGQIQYRP HDSIHSNWTK IIPLQAGERI TSVAATPVRV IVGTSLGYFR 60
61 SFNQFGVPFA VEKTSPIVAL TAQNYRVFSV HYSQFHGLSY SLSELGTSSK RYYKRECPLP 120
121 MSLPNINSDM KKDANLDYYN FNPMGIKSLF FSSYGDPCIF GSDNTLLLLS KWRSPEESKW 180
181 LPILDSNMEI WKMSGGKETT DIHVWPLALA YDTLNCILVK GKHIWPEFPL PLPSEMEIRM 240
241 PVFVKSKLLE ENKAIL
|
| Detection Method: | |
Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.
|
Region A: Residues: [795-927] |
1 11 21 31 41 51
| | | | | |
1 NKKNEIGADT EAEEGEEDKE IQIPVSMAAE EEYLRSKVLS ELLTDTLEND GEMYGNENEV 60
61 LAALNGAYDK ALLRLFASAC SDQNVEKALS LAHELKQDRA LTAAVKISER AELPSLVKKI 120
121 NNIREARYEQ QLK
|
| Detection Method: | |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
| MCM Score |
GO Score |
GO Term |
SCOP Match |
SCOP Description | ||
| View | Download | 0.644 | 0.026 | nuclear chromosome | a.133.1 | Phospholipase A2, PLA2 |
| View | Download | 0.534 | 0.026 | nuclear chromosome | a.25.1 | Ferritin-like |
| View | Download | 0.882 | 0.026 | nuclear chromosome | a.29.3 | Acyl-CoA dehydrogenase C-terminal domain-like |
| View | Download | 0.882 | 0.026 | nuclear chromosome | a.29.3 | Acyl-CoA dehydrogenase C-terminal domain-like |
| View | Download | 0.710 | 0.026 | nuclear chromosome | a.29.3 | Acyl-CoA dehydrogenase C-terminal domain-like |
| View | Download | 0.644 | 0.026 | nuclear chromosome | a.133.1 | Phospholipase A2, PLA2 |
| View | Download | 0.615 | 0.026 | nuclear chromosome | a.62.1 | Hepatitis B viral capsid (hbcag) |
| View | Download | 0.615 | 0.026 | nuclear chromosome | a.62.1 | Hepatitis B viral capsid (hbcag) |
| View | Download | 0.534 | 0.026 | nuclear chromosome | a.25.1 | Ferritin-like |
| View | Download | 0.526 | 0.026 | nuclear chromosome | a.25.2 | Thermoplasma ferritin-like 4-helical bundle |
| View | Download | 0.496 | 0.026 | nuclear chromosome | f.31.1 | Photosystem I reaction center subunit XI, PsaL |
| View | Download | 0.484 | 0.026 | nuclear chromosome | a.22.1 | Histone-fold |
| View | Download | 0.455 | 0.026 | nuclear chromosome | a.24.3 | Cytochromes |
| View | Download | 0.438 | 0.026 | nuclear chromosome | d.67.3 | Ribosome recycling factor, RRF |
| View | Download | 0.435 | 0.026 | nuclear chromosome | a.148.1 | Arp2/3 complex 21 kDa subunit ARPC3 |
| View | Download | 0.422 | 0.026 | nuclear chromosome | a.118.8 | TPR-like |
| View | Download | 0.388 | 0.026 | nuclear chromosome | a.87.1 | DBL homology domain (DH-domain) |
| View | Download | 0.386 | 0.026 | nuclear chromosome | a.118.13 | Arp2/3 complex 16 kDa subunit ARPC5 |
| View | Download | 0.367 | 0.026 | nuclear chromosome | d.24.1 | Pili subunits |
| View | Download | 0.364 | 0.026 | nuclear chromosome | a.19.1 | Fertilization protein |
| View | Download | 0.363 | 0.026 | nuclear chromosome | a.7.1 | Spectrin repeat |
| View | Download | 0.359 | 0.026 | nuclear chromosome | d.79.5 | 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase IspF |
| View | Download | 0.358 | 0.026 | nuclear chromosome | d.58.31 | Methyl-coenzyme M reductase subunits |
| View | Download | 0.358 | 0.026 | nuclear chromosome | a.59.1 | PAH2 domain |
| View | Download | 0.332 | 0.026 | nuclear chromosome | a.4.9 | Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 |
| View | Download | 0.321 | 0.026 | nuclear chromosome | a.77.1 | DEATH domain |
| View | Download | 0.320 | 0.026 | nuclear chromosome | a.163.1 | Crustacean CHH/MIH/GIH neurohormone |
| View | Download | 0.317 | 0.026 | nuclear chromosome | a.24.1 | Apolipoprotein |
| View | Download | 0.311 | 0.026 | nuclear chromosome | a.22.1 | Histone-fold |
| View | Download | 0.303 | 0.026 | nuclear chromosome | a.24.3 | Cytochromes |
| View | Download | 0.303 | 0.026 | nuclear chromosome | f.36.1 | Neurotransmitter-gated ion-channel pransmembrane pore |
| View | Download | 0.300 | 0.026 | nuclear chromosome | f.14.1 | Voltage-gated potassium channels |
| View | Download | 0.287 | 0.026 | nuclear chromosome | a.63.1 | Apolipophorin-III |
| View | Download | 0.286 | 0.026 | nuclear chromosome | a.149.1 | RNase III endonuclease catalytic domain |
| View | Download | 0.282 | 0.026 | nuclear chromosome | i.11.1 | Computational models partly based on NMR data |
| View | Download | 0.280 | 0.026 | nuclear chromosome | f.36.1 | Neurotransmitter-gated ion-channel pransmembrane pore |
| View | Download | 0.279 | 0.026 | nuclear chromosome | a.27.1 | Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases |
| View | Download | 0.278 | 0.026 | nuclear chromosome | a.123.1 | Nuclear receptor ligand-binding domain |
| View | Download | 0.275 | 0.026 | nuclear chromosome | a.118.9 | ENTH/VHS domain |
| View | Download | 0.271 | 0.026 | nuclear chromosome | a.1.1 | Globin-like |
| View | Download | 0.270 | 0.026 | nuclear chromosome | a.24.4 | Hemerythrin |
| View | Download | 0.268 | 0.026 | nuclear chromosome | d.82.2 | Frataxin-like |
| View | Download | 0.263 | 0.026 | nuclear chromosome | d.58.21 | Molybdenum cofactor biosynthesis protein C, MoaC |
| View | Download | 0.260 | 0.026 | nuclear chromosome | a.24.2 | Aspartate receptor, ligand-binding domain |
| View | Download | 0.256 | 0.026 | nuclear chromosome | a.118.14 | FliG |
| View | Download | 0.255 | 0.026 | nuclear chromosome | d.113.1 | Nudix |
| View | Download | 0.252 | 0.026 | nuclear chromosome | a.4.1 | Homeodomain-like |
| View | Download | 0.246 | 0.026 | nuclear chromosome | a.118.1 | ARM repeat |
| View | Download | 0.243 | 0.026 | nuclear chromosome | c.2.1 | NAD(P)-binding Rossmann-fold domains |
| View | Download | 0.243 | 0.026 | nuclear chromosome | a.24.9 | alpha-catenin/vinculin |
| View | Download | 0.237 | 0.026 | nuclear chromosome | a.47.2 | t-snare proteins |
| View | Download | 0.227 | 0.026 | nuclear chromosome | d.41.5 | Molybdopterin synthase subunit MoaE |
| View | Download | 0.227 | 0.026 | nuclear chromosome | a.121.1 | Tetracyclin repressor-like, C-terminal domain |
| View | Download | 0.226 | 0.026 | nuclear chromosome | a.24.9 | alpha-catenin/vinculin |
| View | Download | 0.224 | 0.026 | nuclear chromosome | d.104.1 | Class II aaRS and biotin synthetases |
| View | Download | 0.212 | 0.026 | nuclear chromosome | a.87.1 | DBL homology domain (DH-domain) |
| View | Download | 0.209 | 0.026 | nuclear chromosome | a.26.1 | 4-helical cytokines |
| View | Download | 0.207 | 0.026 | nuclear chromosome | a.69.1 | C-terminal domain of alpha and beta subunits of F1 ATP synthase |
| View | Download | 0.203 | 0.026 | nuclear chromosome | d.106.1 | Sterol carrier protein, SCP |
| View | Download | 0.200 | 0.026 | nuclear chromosome | a.23.2 | Diol dehydratase, gamma subunit |
