| Protein: | RGC1 |
| Organism: | Saccharomyces cerevisiae |
| Length: | 1083 amino acids |
| Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RGC1.
| Description | E-value | Query Range |
Subject Range |
|
|
0.0 | [29..1082] | [10..1079] |
|
|
3.0E-91 | [230..552] | [164..465] |
|
|
2.0E-89 | [268..574] | [87..380] |
|
Region A: Residues: [1-475] |
1 11 21 31 41 51
| | | | | |
1 MSDYFTFPKQ ENGGISKQPA TPGSTRSSSR NLELPKNYRS FGGSSDELAS MYSADSQYLM 60
61 DMIPDSLTLK NEPASGNTQM NGPDGKENKD IKLDEYILPK TDPRSPYYIN MPIPKKLPKS 120
121 EGKARAKQKV NRADPSDLDV ENIYETSGEF VREYPTDILI DRFHKWKKIL KSLIAYFREA 180
181 AYSQEQIARI NYQMKNAVKF AFLTDLEDET NKLVDPSISK LPTKKPQPVP LAAQKLDSKY 240
241 DTDVEQPQSI QSVPSEEVAS ASSGFMKFGS GSIQDIQVIL KKYHLSLGSQ QYKISKEILA 300
301 YIIPKLTDLR KDLTTKMKEI KELNGDFKTN IGEHIKITSR LLNKYIASVK LLDEASTSGD 360
361 KQGEKLKPKH DPYLLKLQLD LQLKRQLLEE NYLREAFLNL QSAALQLEKI VYSKIQSALQ 420
421 RYSALIDSEA RLMIKNLCHE LQQGILSRPP AVEWDNFVSH HPTCLMNLKS TDPPP
|
| Detection Method: |  |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [476-747] |
1 11 21 31 41 51
| | | | | |
1 QPRRLSDIVY PNMKSPLAKC IRVGYLLKKT ESSKSFTKGY FVLTTNYLHE FKSSDFFLDS 60
61 KSPRSKNKPV VEQSDISRVN KDGTNAGSHP SSKGTQDPKL TKRRKGLSSS NLYPISSLSL 120
121 NDCSLKDSTD STFVLQGYAS YHSPEDTCTK ESSTTSDLAC PTKTLASNKG KHQRTPSALS 180
181 MVSVPKFLKS SSVPKEQKKA KEEANINKKS ICEKRVEWTF KIFSASLEPT PEESKNFKKW 240
241 VQDIKALTSF NSTQERSNFI EEKILKSRNH NN
|
| Detection Method: | |
| Confidence: | 6.958607 |
| Match: | PF00169 |
| Description: | PH domain |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [748-1083] |
1 11 21 31 41 51
| | | | | |
1 GKSSQRSKNS TYITPVDSFV NLSEKVTPSS SVTTLNTRKR ANRPRYIDIP KSANMNAGAM 60
61 NSVYRSKVNT PAIDENGNLA IVGETKNSAP QNGMSYTIRT PCKSPYSPYT GEGMLYNRSA 120
121 DNLMASSSRK ASAPGEVPQI AVSNHGDEAI IPASAYSDSS HKSSRASSVA SIHNQRVDFY 180
181 PSPLMNLPGV SPSCLALDGN ANGYFGIPLN CNSEARRGSD LSPFEMESPL FEENRTQNCS 240
241 GSRKSSACHI PHQCGPRKEG NDSRLIYGNE KGASQSRLTL KEPLTSKGVE APYSSLKKTY 300
301 SAENVPLTST VSNDKSLHSR KEGSTNTVPA TSASSK
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [469-805] |
1 11 21 31 41 51
| | | | | |
1 KSTDPPPQPR RLSDIVYPNM KSPLAKCIRV GYLLKKTESS KSFTKGYFVL TTNYLHEFKS 60
61 SDFFLDSKSP RSKNKPVVEQ SDISRVNKDG TNAGSHPSSK GTQDPKLTKR RKGLSSSNLY 120
121 PISSLSLNDC SLKDSTDSTF VLQGYASYHS PEDTCTKESS TTSDLACPTK TLASNKGKHQ 180
181 RTPSALSMVS VPKFLKSSSV PKEQKKAKEE ANINKKSICE KRVEWTFKIF SASLEPTPEE 240
241 SKNFKKWVQD IKALTSFNST QERSNFIEEK ILKSRNHNNG KSSQRSKNST YITPVDSFVN 300
301 LSEKVTPSSS VTTLNTRKRA NRPRYIDIPK SANMNAG
|
| Detection Method: | |
| Confidence: | 0.982 |
| Match: | 1qqgA |
| Description: | Insulin receptor substrate 1, IRS-1 |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| binding | 1.92972815841164 | bayes_pls_golite062009 |
| protein binding | 1.26119545864643 | bayes_pls_golite062009 |
| hydrolase activity | 0.0325416327974032 | bayes_pls_golite062009 |
|
Region A: Residues: [806-966] |
1 11 21 31 41 51
| | | | | |
1 AMNSVYRSKV NTPAIDENGN LAIVGETKNS APQNGMSYTI RTPCKSPYSP YTGEGMLYNR 60
61 SADNLMASSS RKASAPGEVP QIAVSNHGDE AIIPASAYSD SSHKSSRASS VASIHNQRVD 120
121 FYPSPLMNLP GVSPSCLALD GNANGYFGIP LNCNSEARRG S
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [967-1083] |
1 11 21 31 41 51
| | | | | |
1 DLSPFEMESP LFEENRTQNC SGSRKSSACH IPHQCGPRKE GNDSRLIYGN EKGASQSRLT 60
61 LKEPLTSKGV EAPYSSLKKT YSAENVPLTS TVSNDKSLHS RKEGSTNTVP ATSASSK
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
