Protein: | RGC1 |
Organism: | Saccharomyces cerevisiae |
Length: | 1083 amino acids |
Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RGC1.
Description | E-value | Query Range |
Subject Range |
|
0.0 | [29..1082] | [10..1079] |
|
3.0E-91 | [230..552] | [164..465] |
|
2.0E-89 | [268..574] | [87..380] |
Region A: Residues: [1-475] |
1 11 21 31 41 51 | | | | | | 1 MSDYFTFPKQ ENGGISKQPA TPGSTRSSSR NLELPKNYRS FGGSSDELAS MYSADSQYLM 60 61 DMIPDSLTLK NEPASGNTQM NGPDGKENKD IKLDEYILPK TDPRSPYYIN MPIPKKLPKS 120 121 EGKARAKQKV NRADPSDLDV ENIYETSGEF VREYPTDILI DRFHKWKKIL KSLIAYFREA 180 181 AYSQEQIARI NYQMKNAVKF AFLTDLEDET NKLVDPSISK LPTKKPQPVP LAAQKLDSKY 240 241 DTDVEQPQSI QSVPSEEVAS ASSGFMKFGS GSIQDIQVIL KKYHLSLGSQ QYKISKEILA 300 301 YIIPKLTDLR KDLTTKMKEI KELNGDFKTN IGEHIKITSR LLNKYIASVK LLDEASTSGD 360 361 KQGEKLKPKH DPYLLKLQLD LQLKRQLLEE NYLREAFLNL QSAALQLEKI VYSKIQSALQ 420 421 RYSALIDSEA RLMIKNLCHE LQQGILSRPP AVEWDNFVSH HPTCLMNLKS TDPPP |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
Region A: Residues: [476-747] |
1 11 21 31 41 51 | | | | | | 1 QPRRLSDIVY PNMKSPLAKC IRVGYLLKKT ESSKSFTKGY FVLTTNYLHE FKSSDFFLDS 60 61 KSPRSKNKPV VEQSDISRVN KDGTNAGSHP SSKGTQDPKL TKRRKGLSSS NLYPISSLSL 120 121 NDCSLKDSTD STFVLQGYAS YHSPEDTCTK ESSTTSDLAC PTKTLASNKG KHQRTPSALS 180 181 MVSVPKFLKS SSVPKEQKKA KEEANINKKS ICEKRVEWTF KIFSASLEPT PEESKNFKKW 240 241 VQDIKALTSF NSTQERSNFI EEKILKSRNH NN |
Detection Method: | |
Confidence: | 6.958607 |
Match: | PF00169 |
Description: | PH domain |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
Region A: Residues: [748-1083] |
1 11 21 31 41 51 | | | | | | 1 GKSSQRSKNS TYITPVDSFV NLSEKVTPSS SVTTLNTRKR ANRPRYIDIP KSANMNAGAM 60 61 NSVYRSKVNT PAIDENGNLA IVGETKNSAP QNGMSYTIRT PCKSPYSPYT GEGMLYNRSA 120 121 DNLMASSSRK ASAPGEVPQI AVSNHGDEAI IPASAYSDSS HKSSRASSVA SIHNQRVDFY 180 181 PSPLMNLPGV SPSCLALDGN ANGYFGIPLN CNSEARRGSD LSPFEMESPL FEENRTQNCS 240 241 GSRKSSACHI PHQCGPRKEG NDSRLIYGNE KGASQSRLTL KEPLTSKGVE APYSSLKKTY 300 301 SAENVPLTST VSNDKSLHSR KEGSTNTVPA TSASSK |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
Region A: Residues: [469-805] |
1 11 21 31 41 51 | | | | | | 1 KSTDPPPQPR RLSDIVYPNM KSPLAKCIRV GYLLKKTESS KSFTKGYFVL TTNYLHEFKS 60 61 SDFFLDSKSP RSKNKPVVEQ SDISRVNKDG TNAGSHPSSK GTQDPKLTKR RKGLSSSNLY 120 121 PISSLSLNDC SLKDSTDSTF VLQGYASYHS PEDTCTKESS TTSDLACPTK TLASNKGKHQ 180 181 RTPSALSMVS VPKFLKSSSV PKEQKKAKEE ANINKKSICE KRVEWTFKIF SASLEPTPEE 240 241 SKNFKKWVQD IKALTSFNST QERSNFIEEK ILKSRNHNNG KSSQRSKNST YITPVDSFVN 300 301 LSEKVTPSSS VTTLNTRKRA NRPRYIDIPK SANMNAG |
Detection Method: | |
Confidence: | 0.982 |
Match: | 1qqgA |
Description: | Insulin receptor substrate 1, IRS-1 |
Matching Structure (courtesy of the PDB): |
Term | Confidence | Notes |
binding | 1.92972815841164 | bayes_pls_golite062009 |
protein binding | 1.26119545864643 | bayes_pls_golite062009 |
hydrolase activity | 0.0325416327974032 | bayes_pls_golite062009 |
Region A: Residues: [806-966] |
1 11 21 31 41 51 | | | | | | 1 AMNSVYRSKV NTPAIDENGN LAIVGETKNS APQNGMSYTI RTPCKSPYSP YTGEGMLYNR 60 61 SADNLMASSS RKASAPGEVP QIAVSNHGDE AIIPASAYSD SSHKSSRASS VASIHNQRVD 120 121 FYPSPLMNLP GVSPSCLALD GNANGYFGIP LNCNSEARRG S |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
Region A: Residues: [967-1083] |
1 11 21 31 41 51 | | | | | | 1 DLSPFEMESP LFEENRTQNC SGSRKSSACH IPHQCGPRKE GNDSRLIYGN EKGASQSRLT 60 61 LKEPLTSKGV EAPYSSLKKT YSAENVPLTS TVSNDKSLHS RKEGSTNTVP ATSASSK |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.