YRC Public Data Repository - Protein Structure Prediction

Protein:	SNT309
Organism:	Saccharomyces cerevisiae
Length:	175 amino acids
Reference:	Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SNT309.

Description	E-value	Query Range	Subject Range
SN309_ASHGO - Pre-mRNA-splicing factor SNT309 OS=Ashbya gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 / NRR... SN309_ASHGO - Pre-mRNA-splicing factor SNT309 OS=Ashbya gossypii GN=SNT309 PE=3 SV=1	69.0	[0..1]	[147..6]
SN309_CANGA - Pre-mRNA-splicing factor SNT309 OS=Candida glabrata GN=SNT309 PE=3 SV=1 SN309_CANGA - Pre-mRNA-splicing factor SNT309 OS=Candida glabrata (strain ATCC 2001 / CBS 138 / JCM 3761 / NBRC 06...	69.0	[0..4]	[173..5]

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Predicted Domain #1

Region A:
Residues: [1-175]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDGLSFVDKG KIPDGYKNEI DQLVKKEFAN IKREPVHPEI RGILAKRKGA DNSVSTLTNA  60
   61 LYTEYLKQRN NKKRRTPDFN DDDDTLFLEE YRRKYPRIDT SRYIPNESSE VSLLGIVDSY 120
  121 LKHQEIVLDT LLPQTVSNQW RINNDYIRQT CTIVEEMNIQ QRKQINDLEI YRKRL

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits