YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Structure Prediction Details

Protein: SNT309
Organism: Saccharomyces cerevisiae
Length: 175 amino acids
Reference: Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076



[What does the above image mean?]


[Show Ginzu Version Information]


Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SNT309.

Description E-value Query
Range
Subject
Range
SN309_ASHGO - Pre-mRNA-splicing factor SNT309 OS=Ashbya gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 / NRR...
SN309_ASHGO - Pre-mRNA-splicing factor SNT309 OS=Ashbya gossypii GN=SNT309 PE=3 SV=1
69.0 [0..1] [147..6]
SN309_CANGA - Pre-mRNA-splicing factor SNT309 OS=Candida glabrata GN=SNT309 PE=3 SV=1
SN309_CANGA - Pre-mRNA-splicing factor SNT309 OS=Candida glabrata (strain ATCC 2001 / CBS 138 / JCM 3761 / NBRC 06...
69.0 [0..4] [173..5]

Back

Predicted Domain #1
Region A:
Residues: [1-175]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDGLSFVDKG KIPDGYKNEI DQLVKKEFAN IKREPVHPEI RGILAKRKGA DNSVSTLTNA  60
   61 LYTEYLKQRN NKKRRTPDFN DDDDTLFLEE YRRKYPRIDT SRYIPNESSE VSLLGIVDSY 120
  121 LKHQEIVLDT LLPQTVSNQW RINNDYIRQT CTIVEEMNIQ QRKQINDLEI YRKRL

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

    MCM
Score
SCOP
Match
SCOP Description
View Download 0.357 d.54.1 Enolase N-terminal domain-like
View Download 0.330 d.95.2 Homing endonucleases
View Download 0.321 d.54.1 Enolase N-terminal domain-like
View Download 0.302 d.54.1 Enolase N-terminal domain-like
View Download 0.300 a.118.1 ARM repeat
View Download 0.300 a.118.1 ARM repeat
View Download 0.238 d.54.1 Enolase N-terminal domain-like
View Download 0.231 c.72.2 MurD-like peptide ligases, catalytic domain
View Download 0.209 d.54.1 Enolase N-terminal domain-like


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle