YRC Public Data Repository - Protein Structure Prediction

Protein:	YPR091C
Organism:	Saccharomyces cerevisiae
Length:	770 amino acids
Reference:	Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for YPR091C.

Description	E-value	Query Range	Subject Range
YPR091C - Putative protein of unknown function; may interact with ribosomes, based on co-purification experime... YP091_YEAST - Uncharacterized PH domain-containing protein YPR091C OS=Saccharomyces cerevisiae (strain ATCC 204508...	0.0	[1..770]	[1..770]
gi\|85112049 - gi\|85112049\|ref\|XP_964231.1\| hypothetical protein NCU01947 [Neurospora crassa OR74A] gi\|28926004, gi\|... - gi\|32417318\|ref\|XP_329137.1\| hypothetical protein [Neurospora crassa], gi\|28926004\|gb\|EAA34995.1\| co...	0.0	[3..718]	[2..642]
CE32837 - WBGene00008274 status:Partially_confirmed TR:Q9U3L2 protein_id:CAB54213.2	5.0E-90	[277..704]	[39..478]
SPBC23G7.06c - conserved eukaryotic protein gi\|19112656 - gi\|19112656\|ref\|NP_595864.1\| hypothetical protein SPBC23G7.06c [Schizosaccharomyces pombe 972h-]	6.0E-77	[301..693]	[204..586]
CG10362-PA - This gene is referred to in FlyBase by the symbol Dmel\CG10362 (CG10362, FBgn0030358). It is a prote...	1.0E-64	[284..681]	[59..481]
gi\|8388621, gi\|7... - gi\|8388621\|emb\|CAB94141.1\| CaLB protein [Arabidopsis thaliana], gi\|79315898\|ref\|NP_001030908.1\| NTMC...	5.0E-51	[277..556]	[18..309]

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Predicted Domain #1

Region A:
Residues: [1-109]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MASLKVFLAV YLLGGITFLP LVLFTLYKIH LLYSNLKSAS KKELDHDTAD EIDEKTRLLA  60
   61 RDIDPEFKAR KLEEQLGVKV FNKGWITVTK QYYYHSSEVA VILKNSNNN

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [110-267]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 KDSDTALQEQ ILQRTDLKKK QRFFAVLRHG NLFLYKDDSQ NANLVHAISL QNRFITIWPR  60
   61 FDELGKEELP DASLFTKRTC IAIFKNDLVS IDSKNHNVIL PHFDPLTSAE SNNGDISTND 120
  121 TTHEYQSQFH SSNQFFLYFD NNMDKEDWYY QLINASKN

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	7.309804
Match:	PF00169
Description:	PH domain

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3

Region A:
Residues: [268-591]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SNSLSTGLLD PNVSANAAHL KTKDMLQLIQ DINSTENQLT TKWLNALLGR LFLSLQQTDT  60
   61 LNKFIHEKIC KKLNKIKTPG FLDDLVVEKV DVGDSAPLFT SPELLELSPE GSTKIAIDVQ 120
  121 YRGNLTIIIA TKASINLGSR FKQREVSLQL SIKIKEFSGP LLFLIKPPPS NRIWYAFRTE 180
  181 PIMDFEIEPI VSSSKLSYNV VTNAIKSKFA EAVKESLVVP FMDDIVFYPT PNEVYRGGIW 240
  241 EEQDPEAAAR ARTAAAASDM NNTSAKEHLE ALQEGGMKTQ SRIKKALRPE RKKENLKDLV 300
  301 DASGVATKTT TQTTVTTATN DDVS

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #4

Region A:
Residues: [592-770]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SSENSTKSRK YFKNSIKKIG RWYKDNVGNS SDTEDMDEID VQDKKNDDSA DERESDNPIL  60
   61 TSNPKMISNR RPVPRRPSQP LNTLSPKLEG RKEKDTENFP VPPSASNMNA SKMFANKENR 120
  121 KFSVSSNDSQ NSLKNGDPHV KASKLESSQA FVKKTSQNRF NDGFFKQDLE FEEQREPKL

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits