| Protein: | ATG11 |
| Organism: | Saccharomyces cerevisiae |
| Length: | 1178 amino acids |
| Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for ATG11.
| Description | E-value | Query Range |
Subject Range |
|
|
0.0 | [29..1120] | [808..1928] |
|
|
0.0 | [29..1120] | [808..1928] |
|
|
0.0 | [29..1120] | [812..1932] |
|
|
0.0 | [29..1120] | [811..1931] |
|
Region A: Residues: [1-376] |
1 11 21 31 41 51
| | | | | |
1 MADADEYSTA PTQQEITPLQ TTATIINAIS GECITTNVDF FVSLDKFKQF IARKWKIPPD 60
61 QLLILLPYGN KLKPSMFKEL LINRSFTLND FYVYDRRLFS LVSKPTPTNL LTSKDSNPMN 120
121 SPNSNDLTET LEYLIKNSHI SQYQGSDTIM IKPMPSPLED ADVDLSRLNY HSVTSLLTTN 180
181 LGWLSALEID VHYFKSLIPD IIAHIKRIFD GLTVCSQYLK LYCFDVESLY NSNVQFLNQL 240
241 VDNGMTSKWE KCFNDTLSKL TALEGDSLQK FINIESLLEN EKSVKILNHS INGKLNKIKR 300
301 EIDENASFRD IITVNIDRLR QMFTPNESKF ELEDQMAESF EVLVSEMRTR SRNVLDKEEE 360
361 EFNSQEFLKS MNVMLE
|
| Detection Method: |  |
| Confidence: | 24.0 |
| Match: | 1i84S_ |
| Description: | Heavy meromyosin subfragment |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [377-482] |
1 11 21 31 41 51
| | | | | |
1 KDKKESVKTL FTISQALYSQ IGELIDLKKS LQKHAVAILG NIAFTQMEIL GIKRLLLNEC 60
61 NKDLELYKKY EVEFAQVEDL PLIYGLYLIE KYRRLSWFQQ ILSFIS
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
| MCM Score |
GO Score |
GO Term |
SCOP Match |
SCOP Description | ||
| View | Download | 0.961 | 0.030 | protein targeting to vacuole | a.47.2 | t-snare proteins |
| Term | Confidence | Notes |
| binding | 2.24002842608348 | bayes_pls_golite062009 |
| nucleic acid binding | 1.29023721388505 | bayes_pls_golite062009 |
| transcription regulator activity | 1.23558162468883 | bayes_pls_golite062009 |
| DNA binding | 1.22770101477594 | bayes_pls_golite062009 |
| protein binding | 1.03780839342631 | bayes_pls_golite062009 |
| transcription factor activity | 0.65548647141585 | bayes_pls_golite062009 |
| RNA polymerase II transcription factor activity | 0.16394692014973 | bayes_pls_golite062009 |
|
Region A: Residues: [483-553] |
1 11 21 31 41 51
| | | | | |
1 NFNQDLELFK QNELRTRNKW VKNFGSIATV FCEDLLSSSD FKRLNEYHSH TSPPNEDEED 60
61 ENENSIANYR Q
|
| Detection Method: | |
| Confidence: | 8.30103 |
| Match: | 2tmaA_ |
| Description: | Tropomyosin |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [554-636] |
1 11 21 31 41 51
| | | | | |
1 DLVKVSQAID NYMTQIKETD VSEPIIDLLS KTLFETKRFH IIYSNFKNNN NNSSNGNSIS 60
61 PEGSIALKSD DVVKGYKTRI KKL
|
| Detection Method: | |
| Confidence: | 8.30103 |
| Match: | 2tmaA_ |
| Description: | Tropomyosin |
| Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [637-698] |
1 11 21 31 41 51
| | | | | |
1 ESLLHEFQYS DIGHWPQGVL NTHLKPFRGS ATSINKKKFL GASVLLEPAN ISEVNIDSVS 60
61 QA
|
| Detection Method: | |
| Confidence: | 8.30103 |
| Match: | 2tmaA_ |
| Description: | Tropomyosin |
| Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [699-768] |
1 11 21 31 41 51
| | | | | |
1 NNHQIQELES NVDDLLHQLQ LLKEENNRKS MQISEMGKKI SDLEVEKTAY RETLTNLNQE 60
61 LARLTNEEQS
|
| Detection Method: | |
| Confidence: | 8.30103 |
| Match: | 2tmaA_ |
| Description: | Tropomyosin |
| Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [769-925] |
1 11 21 31 41 51
| | | | | |
1 HRTEIFTLNA SFKKQLNDII SQDNEKIEKL TGDYDDVSKS RERLQMDLDE SNKKHEQEVN 60
61 LLKADIERLG KQIVTSEKSY AETNSSSMEK GEKFETIPLA EDPGRENQIS AYTQTLQDRI 120
121 FDIISTNIFI LENIGLLLTF DNNNNIQIRR VKGLKKG
|
| Detection Method: | |
| Confidence: | 4.0 |
| Match: | 1jchA_ |
| Description: | Ribonuclease domain of colicin E3; Colicin E3 translocation domain; Colicin E3 receptor domain |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [926-1178] |
1 11 21 31 41 51
| | | | | |
1 TAQSNILDES TQMLDAHDNS LIKSPVFQKL KDEYELIKSV ANGSEKDTQQ SIFLGNITQL 60
61 YDNKLYEVAV IRRFKDIETL AKKLTKENKI KRTLLERFQR EKVTLRNFQI GDLALFLPTR 120
121 ENVNSVGSMS SSTSSLSSSF SSVDLSTPPP LDAMSIQSSP SVIHSNVINQ ASISGRDKNK 180
181 LMRPWAAFTA FEESTRYFLK DEKGLTKGKE WFVGRIVTLE HFVADSPSNN PFRLPKGSVW 240
241 FQVTAVVVSY QGV
|
| Detection Method: | |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
