Protein: | RPA135 |
Organism: | Saccharomyces cerevisiae |
Length: | 1203 amino acids |
Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RPA135.
Description | E-value | Query Range |
Subject Range |
|
0.0 | [8..1174] | [21..1170] |
|
0.0 | [19..1171] | [7..1174] |
|
0.0 | [10..1201] | [14..1179] |
|
0.0 | [18..1202] | [13..1208] |
|
0.0 | [3..1161] | [9..1109] |
|
0.0 | [26..1148] | [81..1189] |
|
0.0 | [16..1154] | [2..1170] |
|
0.0 | [9..1174] | [16..1164] |
|
0.0 | [7..1200] | [14..1134] |
|
0.0 | [5..1177] | [1..1159] |
Region A: Residues: [1-895] |
1 11 21 31 41 51 | | | | | | 1 MSKVIKPPGQ ARTADFRTLE RESRFINPPK DKSAFPLLQE AVQPHIGSFN ALTEGPDGGL 60 61 LNLGVKDIGE KVIFDGKPLN SEDEISNSGY LGNKLSVSVE QVSIAKPMSN DGVSSAVERK 120 121 VYPSESRQRL TSYRGKLLLK LKWSVNNGEE NLFEVRDCGG LPVMLQSNRC HLNKMSPYEL 180 181 VQHKEESDEI GGYFIVNGIE KLIRMLIVQR RNHPMAIIRP SFANRGASYS HYGIQIRSVR 240 241 PDQTSQTNVL HYLNDGQVTF RFSWRKNEYL VPVVMILKAL CHTSDREIFD GIIGNDVKDS 300 301 FLTDRLELLL RGFKKRYPHL QNRTQVLQYL GDKFRVVFQA SPDQSDLEVG QEVLDRIVLV 360 361 HLGKDGSQDK FRMLLFMIRK LYSLVAGECS PDNPDATQHQ EVLLGGFLYG MILKEKIDEY 420 421 LQNIIAQVRM DINRGMAINF KDKRYMSRVL MRVNENIGSK MQYFLSTGNL VSQSGLDLQQ 480 481 VSGYTVVAEK INFYRFISHF RMVHRGSFFA QLKTTTVRKL LPESWGFLCP VHTPDGSPCG 540 541 LLNHFAHKCR ISTQQSDVSR IPSILYSLGV APASHTFAAG PSLCCVQIDG KIIGWVSHEQ 600 601 GKIIADTLRY WKVEGKTPGL PIDLEIGYVP PSTRGQYPGL YLFGGHSRML RPVRYLPLDK 660 661 EDIVGPFEQV YMNIAVTPQE IQNNVHTHVE FTPTNILSIL ANLTPFSDFN QSPRNMYQCQ 720 721 MGKQTMGTPG VALCHRSDNK LYRLQTGQTP IVKANLYDDY GMDNFPNGFN AVVAVISYTG 780 781 YDMDDAMIIN KSADERGFGY GTMYKTEKVD LALNRNRGDP ITQHFGFGND EWPKEWLEKL 840 841 DEDGLPYIGT YVEEGDPICA YFDDTLNKTK IKTYHSSEPA YIEEVNLIGD ESNKF |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
Term | Confidence | Notes |
DNA-directed RNA polymerase activity | 10.2021663255698 | bayes_pls_golite062009 |
RNA polymerase activity | 10.2021663255698 | bayes_pls_golite062009 |
nucleotidyltransferase activity | 7.6240729546188 | bayes_pls_golite062009 |
general RNA polymerase II transcription factor activity | 6.31198922553685 | bayes_pls_golite062009 |
transferase activity, transferring phosphorus-containing groups | 5.44374972993429 | bayes_pls_golite062009 |
transferase activity | 4.83218811360621 | bayes_pls_golite062009 |
transcription regulator activity | 2.34884279395902 | bayes_pls_golite062009 |
DNA binding | 2.02586687916169 | bayes_pls_golite062009 |
nucleic acid binding | 1.91447180328254 | bayes_pls_golite062009 |
binding | 1.53568146966362 | bayes_pls_golite062009 |
RNA polymerase II transcription mediator activity | 1.53259746846673 | bayes_pls_golite062009 |
catalytic activity | 1.36406839864424 | bayes_pls_golite062009 |
RNA binding | 1.12618950637766 | bayes_pls_golite062009 |
RNA polymerase II transcription factor activity | 0.847783043631028 | bayes_pls_golite062009 |
protein binding | 0.35192339064931 | bayes_pls_golite062009 |
Region A: Residues: [896-977] |
1 11 21 31 41 51 | | | | | | 1 QELQTVSIKY RIRRTPQIGD KFSSRHGQKG VCSRKWPTID MPFSETGIQP DIIINPHAFP 60 61 SRMTIGMFVE SLAGKAGALH GI |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
Region A: Residues: [978-1071] |
1 11 21 31 41 51 | | | | | | 1 AQDSTPWIFN EDDTPADYFG EQLAKAGYNY HGNEPMYSGA TGEELRADIY VGVVYYQRLR 60 61 HMVNDKFQVR STGPVNSLTM QPVKGRKRHG GIRV |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
Region A: Residues: [1072-1203] |
1 11 21 31 41 51 | | | | | | 1 GEMERDALIG HGTSFLLQDR LLNSSDYTQA SVCRECGSIL TTQQSVPRIG SISTVCCRRC 60 61 SMRFEDAKKL LTKSEDGEKI FIDDSQIWED GQGNKFVGGN ETTTVAIPFV LKYLDSELSA 120 121 MGIRLRYNVE PK |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.