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View Structure Prediction Details

Protein: SAM3
Organism: Saccharomyces cerevisiae
Length: 587 amino acids
Reference: Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SAM3.

Description E-value Query
Range
Subject
Range
gi|68470470, gi|... - gi|68470731|ref|XP_720611.1| N-acetylglucosamine-inducible general amino acid permease [Candida albi...
gi|18568390 - gi|18568390|gb|AAL76065.1| Gap1 protein [Candida albicans]
gi|238882678 - gi|238882678|gb|EEQ46316.1| general amino-acid permease GAP1 [Candida albicans WO-1]
0.0 [3..587] [1..582]
AGP1_SACBA - General amino acid permease AGP1 OS=Saccharomyces bayanus GN=AGP1 PE=3 SV=1
AGP1_SACU7 - General amino acid permease AGP1 OS=Saccharomyces uvarum (strain ATCC 76518 / CBS 7001 / CLIB 283 / ...
0.0 [4..587] [20..633]
BAP2 - High-affinity leucine permease, functions as a branched-chain amino acid permease involved in the up...
0.0 [15..587] [32..609]
gi|447739 - gi|447739|prf||1915304A nylB upstream ORF
0.0 [15..586] [32..608]

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Predicted Domain #1
Region A:
Residues: [1-56]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDILKRGNES DKFTKIETES TTIPNDSDRS GSLIRRMKDS FKQSNLHVIP EDLENS

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [57-587]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 EQTEQEKIQW KLASQPYQKV LSQRHLTMIA IGGTLGTGLF IGLGYSLASG PAALLIGFLL  60
   61 VGTSMFCVVQ SAAELSCQFP VSGSYATHVS RFIDESVGFT VATNYALAWL ISFPSELIGC 120
  121 ALTISYWNQT VNPAVWVAIF YVFIMVLNLF GVRGFAETEF ALSIIKVIAI FIFIIIGIVL 180
  181 IAGGGPNSTG YIGAKYWHDP GAFAKPVFKN LCNTFVSAAF SFGGSELVLL TSTESKNISA 240
  241 ISRAAKGTFW RIAIFYITTV VIIGCLVPYN DPRLLSGSNS EDVSASPFVI ALSNTGSMGA 300
  301 KVSNFMNVVI LVAVVSVCNS CVYASSRLIQ ALGASGQLPS VCSYMDRKGR PLVGIGISGA 360
  361 FGLLGFLVAS KKEDEVFTWL FALCSISSFF TWFCICMSQI RFRMALKAQG RSNDEIAYKS 420
  421 ILGVYGGILG CVLNALLIAG EIYVSAAPVG SPSSAEAFFE YCLSIPIMIV VYFAHRFYRR 480
  481 DWKHFYIKRS EIDLDTGCSV ENLELFKAQK EAEEQLIASK PFYYKIYRFW C

[Run NCBI BLAST on this sequence.]

Detection Method: Pfam
Confidence: 172.251812
Match: PF00324
Description: Amino acid permease

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle