| Protein: | SAM3 |
| Organism: | Saccharomyces cerevisiae |
| Length: | 587 amino acids |
| Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SAM3.
| Description | E-value | Query Range |
Subject Range |
|
|
0.0 | [3..587] | [1..582] |
|
|
0.0 | [4..587] | [20..633] |
|
|
0.0 | [15..587] | [32..609] |
|
|
0.0 | [15..586] | [32..608] |
|
Region A: Residues: [1-56] |
1 11 21 31 41 51
| | | | | |
1 MDILKRGNES DKFTKIETES TTIPNDSDRS GSLIRRMKDS FKQSNLHVIP EDLENS
|
| Detection Method: |  |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
| MCM Score |
SCOP Match |
SCOP Description | ||
| View | Download | 0.361 | d.58.17 | Metal-binding domain |
| View | Download | 0.393 | a.65.1 | Annexin |
| View | Download | 0.372 | d.52.3 | Prokaryotic type KH domain (KH-domain type II) |
| View | Download | 0.442 | d.186.1 | Head-to-tail joining protein W, gpW |
| View | Download | 0.426 | g.58.1 | Pheromone ER-23 |
| View | Download | 0.331 | d.68.6 | DNA-binding protein Sso10b (AlbA) |
| View | Download | 0.325 | a.4.5 | "Winged helix" DNA-binding domain |
| View | Download | 0.318 | d.48.1 | RecA protein, C-terminal domain |
| View | Download | 0.305 | d.58.17 | Metal-binding domain |
| View | Download | 0.279 | g.18.1 | Complement control module/SCR domain |
| View | Download | 0.251 | a.4.5 | "Winged helix" DNA-binding domain |
| View | Download | 0.250 | d.58.5 | GlnB-like |
| View | Download | 0.246 | d.58.24 | CheY-binding domain of CheA |
| View | Download | 0.238 | d.58.7 | RNA-binding domain, RBD |
| View | Download | 0.222 | d.58.17 | Metal-binding domain |
| View | Download | 0.211 | a.4.5 | "Winged helix" DNA-binding domain |
|
Region A: Residues: [57-587] |
1 11 21 31 41 51
| | | | | |
1 EQTEQEKIQW KLASQPYQKV LSQRHLTMIA IGGTLGTGLF IGLGYSLASG PAALLIGFLL 60
61 VGTSMFCVVQ SAAELSCQFP VSGSYATHVS RFIDESVGFT VATNYALAWL ISFPSELIGC 120
121 ALTISYWNQT VNPAVWVAIF YVFIMVLNLF GVRGFAETEF ALSIIKVIAI FIFIIIGIVL 180
181 IAGGGPNSTG YIGAKYWHDP GAFAKPVFKN LCNTFVSAAF SFGGSELVLL TSTESKNISA 240
241 ISRAAKGTFW RIAIFYITTV VIIGCLVPYN DPRLLSGSNS EDVSASPFVI ALSNTGSMGA 300
301 KVSNFMNVVI LVAVVSVCNS CVYASSRLIQ ALGASGQLPS VCSYMDRKGR PLVGIGISGA 360
361 FGLLGFLVAS KKEDEVFTWL FALCSISSFF TWFCICMSQI RFRMALKAQG RSNDEIAYKS 420
421 ILGVYGGILG CVLNALLIAG EIYVSAAPVG SPSSAEAFFE YCLSIPIMIV VYFAHRFYRR 480
481 DWKHFYIKRS EIDLDTGCSV ENLELFKAQK EAEEQLIASK PFYYKIYRFW C
|
| Detection Method: | |
| Confidence: | 172.251812 |
| Match: | PF00324 |
| Description: | Amino acid permease |
Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.
