| Protein: | MDL2 |
| Organism: | Saccharomyces cerevisiae |
| Length: | 820 amino acids |
| Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for MDL2.
| Description | E-value | Query Range |
Subject Range |
|
|
0.0 | [2..735] | [545..1276] |
|
|
0.0 | [2..735] | [551..1282] |
|
|
0.0 | [2..735] | [539..1270] |
|
|
0.0 | [2..735] | [367..1098] |
|
|
0.0 | [2..735] | [535..1266] |
|
|
0.0 | [17..735] | [577..1279] |
|
|
0.0 | [2..735] | [543..1274] |
|
Region A: Residues: [1-134] |
1 11 21 31 41 51
| | | | | |
1 MKTYVLLYGK LIMTTMILNT GRFEEWYKVC IIALKEKEIY VPSSPIAMLN GRLPLLRLGI 60
61 CRNMLSRPRL AKLPSIRFRS LVTPSSSQLI PLSRLCLRSP AVGKSLILQS FRCNSSKTVP 120
121 ETSLPSASPI SKGS
|
| Detection Method: |  |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [135-257] |
1 11 21 31 41 51
| | | | | |
1 ARSAHAKEQS KTDDYKDIIR LFMLAKRDWK LLLTAILLLT ISCSIGMSIP KVIGIVLDTL 60
61 KTSSGSDFFD LKIPIFSLPL YEFLSFFTVA LLIGCAANFG RFILLRILSE RVVARLRANV 120
121 IKK
|
|
Region B: Residues: [276-473] |
1 11 21 31 41 51
| | | | | |
1 SRLGSDAYVV SRSMTQKVSD GVKALICGVV GVGMMCSLSP QLSILLLFFT PPVLFSASVF 60
61 GKQIRNTSKD LQEATGQLTR VAEEQLSGIK TVQSFVAEGN ELSRYNVAIR DIFQVGKTAA 120
121 FTNAKFFTTT SLLGDLSFLT VLAYGSYLVL QSQLSIGDLT AFMLYTEYTG NAVFGLSTFY 180
181 SEIMQGAGAA SRLFELTD
|
| Detection Method: | |
| Confidence: | 1660.0 |
| Match: | 1jsqA_ |
| Description: | MsbA |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [258-275] |
1 11 21 31 41 51
| | | | | |
1 TLHQDAEFFD NHKVGDLI
|
|
Region B: Residues: [474-752] |
1 11 21 31 41 51
| | | | | |
1 RKPSISPTVG HKYKPDRGVI EFKDVSFSYP TRPSVQIFKN LNFKIAPGSS VCIVGPSGRG 60
61 KSTIALLLLR YYNPTTGTIT IDNQDISKLN CKSLRRHIGI VQQEPVLMSG TIRDNITYGL 120
121 TYTPTKEEIR SVAKQCFCHN FITKFPNTYD TVIGPHGTLL SGGQKQRIAI ARALIKKPTI 180
181 LILDEATSAL DVESEGAINY TFGQLMKSKS MTIVSIAHRL STIRRSENVI VLGHDGSVVE 240
241 MGKFKELYAN PTSALSQLLN EKAAPGPSDQ QLQIEKVIE
|
| Detection Method: | |
| Confidence: | 1660.0 |
| Match: | 1jsqA_ |
| Description: | MsbA |
| Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [753-820] |
1 11 21 31 41 51
| | | | | |
1 KEDLNESKEH DDQKKDDNDD NDNNHDNDSN NQSPETKDNN SDDIEKSVEH LLKDAAKEAN 60
61 PIKITPQP
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
