YRC Public Data Repository - Protein Structure Prediction

Protein:	HFI1
Organism:	Saccharomyces cerevisiae
Length:	488 amino acids
Reference:	Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for HFI1.

Description	E-value	Query Range	Subject Range
gi\|1145779 - gi\|1145779\|gb\|AAA84983.1\| Hfi1p	0.0	[1..488]	[1..488]
SPBC887.18c - transcription adaptor protein HFI1_SCHPO - Transcriptional coactivator hfi1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=hfi1 PE=3...	9.0E-92	[50..378]	[11..326]
gi\|28922500, gi\|... - gi\|32406094\|ref\|XP_323660.1\| predicted protein [Neurospora crassa], gi\|28922500\|gb\|EAA31730.1\| hypot... gi\|85100450 - gi\|85100450\|ref\|XP_960966.1\| hypothetical protein NCU04320 [Neurospora crassa OR74A]	1.0E-71	[60..317]	[45..281]
gi\|7270047, gi\|1... - gi\|91805619\|gb\|ABE65538.1\| hypothetical protein At4g31440 [Arabidopsis thaliana], pir\|\|T10674 hypoth...	6.0E-66	[57..322]	[5..296]
gi\|50918949, gi\|... - gi\|50918949\|ref\|XP_469871.1\| hypothetical protein [Oryza sativa (japonica cultivar-group)], gi\|25567... gi\|125545813 - gi\|125545813\|gb\|EAY91952.1\| hypothetical protein OsI_13639 [Oryza sativa Indica Group]	6.0E-56	[60..315]	[9..236]

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Predicted Domain #1

Region A:
Residues: [1-322]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSAIQSPAPK PLQPTYPAAS PASTNAYMKP GLIGSPAVSN HTEPNNGNNE TAEPQGPNQR  60
   61 IDLGAMIEEL TSLLGKESWT KYAQIISLFI LGKLSRKELS NELELVFSPS AASLEKSNTN 120
  121 HHHSLVRLHN QLLLGIFANS LRENPLGRNG NESSWGFGNG SNNPNNKLKR INKHNSQIEV 180
  181 YKKIVMSLPL NDRNRLKMIT KEAGKRGFIF CSVFQARLNN IPKIPIVTNP ESLKRVKSNN 240
  241 LKTPLEWSQD IMNGFNVPLA SESHSLPDTD SFYLRMVGIA REHGLVGTVD ARCVELISLA 300
  301 LDQYLKNIIE FTIDTVRYRR KK

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [323-488]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 YSDYYDLNES GLYKSVSEMA ADKRDAKIKQ LDDDKNEDEC ADEAKSINNG NNSSKDDIGD  60
   61 ISMSSITKAG EAVNEELHEN RTISLTNEDI YDSLSIFPNL VEPSGSYYAL TNLGLVNDDE 120
  121 LVDMKSNIDD LPDFLNEKPT FTPLDERNVG TRHELNWLIK GILTED

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits