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View Structure Prediction Details

Protein: YPL247C
Organism: Saccharomyces cerevisiae
Length: 523 amino acids
Reference: Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for YPL247C.

Description E-value Query
Range
Subject
Range
gi|23128312, gi|... - gi|23128312|ref|ZP_00110163.1| COG2319: FOG: WD40 repeat [Nostoc punctiforme PCC 73102], gi|18668169...
0.0 [1..521] [605..1088]
YY46_NOSS1 - Uncharacterized WD repeat-containing protein alr3466 OS=Nostoc sp. (strain PCC 7120 / UTEX 2576) GN=...
gi|25530855 - pir||AC2239 WD-40 repeat protein [imported] - Nostoc sp. (strain PCC 7120)
0.0 [3..521] [914..1437]
gi|17225208 - gi|17225208|gb|AAL37300.1|AF323584_1 beta transducin-like protein HET-E2C*40 [Podospora anserina]
0.0 [22..521] [819..1246]

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Predicted Domain #1
Region A:
Residues: [1-122]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDPFHNGNKR SSISFGSSQR QPYNKNNYLS GTNGPSSAAQ DQGRGPSPFG MSGNTTNGGN  60
   61 SKRNSGCDLS ATYYASRSPM YSPLDFSPPV FSPNHSQLQQ ARGYAANIPV VSNLMNPSMA 120
  121 SV

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 21.69897
Match: 1gxrA_
Description: Groucho/tle1, C-terminal domain
Matching Structure (courtesy of the PDB):

Predicted Domain #2
Region A:
Residues: [123-523]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 CEYQSHYPLF GLDWSADDYV CLGSYKEDSR NKLQVLHSND LLSWESVVDA DVVYPVSKIQ  60
   61 WVPSQLYPRK LATCSDSLRI WSVSPEERQF QEQINLSLCK YNRQHPANPA AADDMKVIGT 120
  121 FPPITSFDWN TVDTNLIISS SIDTTCIVWD LQSSHYVKTQ LIAHDSEVFD VRFLTKSTQL 180
  181 FASCGGDGSV RVFDLRSLAH STIIYEPPSS SVSGATAGTI TPSSKGSDAL LRLEPSPYDP 240
  241 NVLATFAADS NKIIILDMRN PESPILNLQG HGSSVNGIKW HPTKRNVLLS CGDDCQVLYW 300
  301 DLNSSFMEIN AAGSKSPSIH GTSLEDPDGD TEMTDGGAGS GLNEDPLSLN NNSKQVCKTL 360
  361 ETPNMMYANK TQEINNIAWR PQRGDWFGCV SGKKFQNVRV L

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 63.512579
Match: 1gg2B_
Description: beta1-subunit of the signal-transducing G protein heterotrimer
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle