| Protein: | CDC60 |
| Organism: | Saccharomyces cerevisiae |
| Length: | 1090 amino acids |
| Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CDC60.
| Description | E-value | Query Range |
Subject Range |
|
|
0.0 | [1..1090] | [1..1090] |
|
|
0.0 | [2..1090] | [15..1109] |
|
|
0.0 | [8..1084] | [41..1113] |
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0.0 | [5..990] | [10..885] |
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0.0 | [1..1090] | [1..1096] |
|
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0.0 | [8..1084] | [5..1079] |
|
|
0.0 | [5..984] | [10..887] |
|
Region A: Residues: [1-8] |
1 11 21 31 41 51
| | | | | |
1 MSSGLVLE
|
|
Region B: Residues: [787-815] |
1 11 21 31 41 51
| | | | | |
1 AEEITKESNL RTGEITDFFD IAFEHEMNA
|
|
Region C: Residues: [841-862] |
1 11 21 31 41 51
| | | | | |
1 QAARDYYREA SGVMHKDLIA RY
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|
Region D: Residues: [901-912] |
1 11 21 31 41 51
| | | | | |
1 SKPVDKGVLA AL
|
| Detection Method: |  |
| Confidence: | 1000.0 |
| Match: | 1ffyA_ |
| Description: | Isoleucyl-tRNA synthetase (IleRS) |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [9-59] |
1 11 21 31 41 51
| | | | | |
1 NTARRDALIA IEKKYQKIWA EEHQFEIDAP SIEDEPITMD SEELHRTYPK F
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|
Region B: Residues: [71-99] |
1 11 21 31 41 51
| | | | | |
1 VMHAGHCFTL SKVEFSIGFE RMNGKRALF
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|
Region C: Residues: [146-159] |
1 11 21 31 41 51
| | | | | |
1 KDHEDVTKFK AKKS
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|
Region D: Residues: [720-786] |
1 11 21 31 41 51
| | | | | |
1 NGHLMLNNSK MSKSTGNFMT LEQTVEKFGA DAARIAFADA GDTVEDANFD ESNANAAILR 60
61 LFNLKEW
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Region E: Residues: [816-840] |
1 11 21 31 41 51
| | | | | |
1 LIEKTYEQYA LTNYKNALKY GLFDF
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Region F: Residues: [863-900] |
1 11 21 31 41 51
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1 IETQALLLAP IAPHFAEYIY REVLGNQTSV QNAKFPRA
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|
Region G: Residues: [913-999] |
1 11 21 31 41 51
| | | | | |
1 DYLRNLQRSI REGEGQALKK KKGKSAEIDA SKPVKLTLLI SESFPEWQSQ CVEIVRKLFS 60
61 EQTLDDNKKV REHIEPKEMK RAMPFIS
|
| Detection Method: | |
| Confidence: | 1000.0 |
| Match: | 1ffyA_ |
| Description: | Isoleucyl-tRNA synthetase (IleRS) |
| Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [60-70] |
1 11 21 31 41 51
| | | | | |
1 MSSMAYPYMN G
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Region B: Residues: [100-145] |
1 11 21 31 41 51
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1 PLGFHCTGMP ILACADKLKR EAELFGKNFD NVPAEEEEIK EETPAE
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Region C: Residues: [160-206] |
1 11 21 31 41 51
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1 KAAAKKGRGK YQFEIMLQLG IPREEIIKFA DAKYWLTYFP PLCESDC
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|
Region D: Residues: [545-719] |
1 11 21 31 41 51
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1 QWYVDYGEES WKKQAIECLE GMQLFAPEVK NAFEGVLDWL KNWAVCRTYG LGTRLPWDEK 60
61 YLVESLSDST IYQSFYTIAH LLFKDYYGNE IGPLGISADQ MTDEVFDYIF QHQDDVKNTN 120
121 IPLPALQKLR REFEYFYPLD VSISGKDLIP NHLTFFIYTH VALFPKKFWP KGIRA
|
| Detection Method: | |
| Confidence: | 1000.0 |
| Match: | 1ffyA_ |
| Description: | Isoleucyl-tRNA synthetase (IleRS) |
| Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [207-544] |
1 11 21 31 41 51
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1 TSLGARIDWR RSFVTTDANP YYDAFIRWQM NKLKAAGKIK FGERYTIYSE KDGQACMDHD 60
61 RQSGEGVTPQ EYIGVKIEAL EFADDAAKII DSSSDLDKSK KFYFVAATLR PETMYGQTCC 120
121 FVSPTIEYGI FDAGDSYFIT TERAFKNMSY QKLTPKRGFY KPIVTVPGKA FIGTKIHAPQ 180
181 SVYPELRILP METVIATKGT GVVTCVPSNS PDDYITTKDL LHKPEYYGIK PEWIDHEIVP 240
241 IMHTEKYGDL TAKAIVEEKK IQSPKDKNLL AEAKKIAYKE DYYTGTMIYG PYKGEKVEQA 300
301 KNKVKADMIA AGEAFVYNEP ESQVMSRSGD DCIVSLED
|
| Detection Method: | |
| Confidence: | 1000.0 |
| Match: | 1ffyA_ |
| Description: | Isoleucyl-tRNA synthetase (IleRS) |
| Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [1000-1090] |
1 11 21 31 41 51
| | | | | |
1 LLKQRLANEK PEDVFERELQ FSEIDTVKAA ARNVKKAAQA LKIAEFSAIS FPYGAKTGKD 60
61 IFTGEEVEIP PVTKIVENAV PGNPGVVFQN I
|
| Detection Method: | |
Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.
| MCM Score |
GO Score |
GO Term |
SCOP Match |
SCOP Description | ||
| View | Download | 0.688 | 0.568 | leucine-tRNA ligase activity | c.47.1 | Thioredoxin-like |
| View | Download | 0.617 | 0.018 | leucine-tRNA ligase activity | d.58.18 | Regulatory domain in the aminoacid metabolism |
| View | Download | 0.705 | 0.016 | leucine-tRNA ligase activity | c.84.1 | Phosphoglucomutase, first 3 domains |
| View | Download | 0.592 | 0.013 | leucine-tRNA ligase activity | d.52.7 | Ribosome-binding factor A, RbfA |
| View | Download | 0.553 | N/A | N/A | a.60.9 | lambda integrase-like, N-terminal domain |
| View | Download | 0.553 | N/A | N/A | d.52.3 | Prokaryotic type KH domain (KH-domain type II) |
| View | Download | 0.546 | N/A | N/A | d.58.44 | Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains |
| View | Download | 0.539 | N/A | N/A | d.58.14 | Ribosomal protein S6 |
| View | Download | 0.520 | N/A | N/A | d.58.7 | RNA-binding domain, RBD |
| View | Download | 0.518 | N/A | N/A | d.58.41 | SEA domain |
| View | Download | 0.505 | N/A | N/A | c.103.1 | Hypothetical protein MT938 (MTH938) |
| View | Download | 0.503 | N/A | N/A | d.58.4 | Dimeric alpha+beta barrel |
| View | Download | 0.488 | N/A | N/A | d.120.1 | Cytochrome b5 |
| View | Download | 0.471 | N/A | N/A | d.58.17 | Metal-binding domain |
| View | Download | 0.466 | N/A | N/A | b.1.1 | Immunoglobulin |
| View | Download | 0.461 | N/A | N/A | d.39.1 | Dynein light chain 8 (DLC8) |
| View | Download | 0.460 | N/A | N/A | d.57.1 | DNA damage-inducible protein DinI |
| View | Download | 0.460 | N/A | N/A | d.65.1 | Hedgehog/DD-pepidase |
| View | Download | 0.452 | N/A | N/A | a.74.1 | Cyclin-like |
| View | Download | 0.437 | N/A | N/A | g.10.1 | Hairpin loop containing domain-like |
| View | Download | 0.435 | N/A | N/A | d.95.2 | Homing endonucleases |
| View | Download | 0.431 | N/A | N/A | d.130.1 | S-adenosylmethionine synthetase |
| View | Download | 0.428 | N/A | N/A | a.39.1 | EF-hand |
| View | Download | 0.416 | N/A | N/A | d.52.4 | YhbC-like, N-terminal domain |
| View | Download | 0.414 | N/A | N/A | d.58.2 | Aspartate carbamoyltransferase, Regulatory-chain, N-terminal domain |
| View | Download | 0.407 | N/A | N/A | d.51.1 | Eukaryotic type KH-domain (KH-domain type I) |
| View | Download | 0.402 | N/A | N/A | d.58.11 | EF-G/eEF-2 domains III and V |
| View | Download | 0.394 | N/A | N/A | a.24.13 | Domain of the SRP/SRP receptor G-proteins |
| View | Download | 0.393 | N/A | N/A | c.51.1 | Anticodon-binding domain of Class II aaRS |
| View | Download | 0.386 | N/A | N/A | d.58.17 | Metal-binding domain |
| View | Download | 0.377 | N/A | N/A | a.74.1 | Cyclin-like |
| View | Download | 0.376 | N/A | N/A | a.74.1 | Cyclin-like |
| View | Download | 0.373 | N/A | N/A | d.74.1 | Pterin-4a-carbinolamine dehydratase (PCD)/dimerization cofactor of HNF1 (DCoH) |
| View | Download | 0.373 | N/A | N/A | d.14.1 | Ribosomal protein S5 domain 2-like |
| View | Download | 0.366 | N/A | N/A | d.58.8 | Viral DNA-binding domain |
| View | Download | 0.356 | N/A | N/A | d.74.5 | Hypothetical protein Yml108w |
| View | Download | 0.354 | N/A | N/A | d.52.2 | GMP synthetase C-terminal dimerisation domain |
| View | Download | 0.348 | N/A | N/A | d.16.1 | FAD-linked reductases, C-terminal domain |
| View | Download | 0.344 | N/A | N/A | b.43.4 | Riboflavin synthase domain-like |
| View | Download | 0.342 | N/A | N/A | d.58.12 | eEF-1beta-like |
| View | Download | 0.342 | N/A | N/A | b.36.1 | PDZ domain-like |
| View | Download | 0.333 | N/A | N/A | d.52.6 | BolA-like |
| View | Download | 0.330 | N/A | N/A | a.163.1 | Crustacean CHH/MIH/GIH neurohormone |
| View | Download | 0.320 | N/A | N/A | d.58.7 | RNA-binding domain, RBD |
| View | Download | 0.314 | N/A | N/A | a.71.2 | Helical domain of Sec23/24 |
| View | Download | 0.314 | N/A | N/A | d.58.5 | GlnB-like |
| View | Download | 0.309 | N/A | N/A | b.43.4 | Riboflavin synthase domain-like |
| View | Download | 0.305 | N/A | N/A | d.52.1 | Alpha-lytic protease prodomain |
| View | Download | 0.294 | N/A | N/A | d.130.1 | S-adenosylmethionine synthetase |
| View | Download | 0.291 | N/A | N/A | d.56.1 | GroEL-intermediate domain like |
| View | Download | 0.288 | N/A | N/A | d.74.3 | RBP11-like subunits of RNA polymerase |
| View | Download | 0.286 | N/A | N/A | a.51.1 | Cytochrome c oxidase subunit h |
| View | Download | 0.283 | N/A | N/A | d.74.3 | RBP11-like subunits of RNA polymerase |
| View | Download | 0.283 | N/A | N/A | d.17.4 | NTF2-like |
| View | Download | 0.282 | N/A | N/A | b.1.18 | E set domains |
| View | Download | 0.280 | N/A | N/A | d.29.1 | Ribosomal protein L31e |
| View | Download | 0.273 | N/A | N/A | d.58.3 | Protease propeptides/inhibitors |
| View | Download | 0.260 | N/A | N/A | c.47.1 | Thioredoxin-like |
| View | Download | 0.258 | N/A | N/A | d.74.4 | Prokaryotic AspRS, insert domain |
| View | Download | 0.257 | N/A | N/A | d.12.1 | Ribosomal proteins L23 and L15e |
| View | Download | 0.253 | N/A | N/A | d.58.42 | N-utilization substance G protein NusG, N-terminal domain |
| View | Download | 0.251 | N/A | N/A | a.55.1 | IHF-like DNA-binding proteins |
| View | Download | 0.248 | N/A | N/A | a.71.1 | Endoplasmic reticulum protein ERP29, C-domain |
| View | Download | 0.246 | N/A | N/A | d.13.1 | HIT-like |
| View | Download | 0.244 | N/A | N/A | d.202.1 | Transcription factor NusA, N-terminal domain |
| View | Download | 0.242 | N/A | N/A | d.58.35 | Pseudouridine synthase |
| View | Download | 0.242 | N/A | N/A | d.53.1 | Ribosomal protein S3 C-terminal domain |
| View | Download | 0.237 | N/A | N/A | a.60.9 | lambda integrase-like, N-terminal domain |
| View | Download | 0.236 | N/A | N/A | a.60.8 | HRDC-like |
| View | Download | 0.235 | N/A | N/A | a.60.1 | SAM/Pointed domain |
| View | Download | 0.231 | N/A | N/A | a.58.1 | Chemotaxis receptor methyltransferase CheR, N-terminal domain |
| View | Download | 0.228 | N/A | N/A | a.13.1 | alpha-2-Macroglobulin receptor associated protein (RAP) domain 1 |
| View | Download | 0.213 | N/A | N/A | d.58.11 | EF-G/eEF-2 domains III and V |
| View | Download | 0.209 | N/A | N/A | d.227.1 | OsmC-like |
| View | Download | 0.203 | N/A | N/A | d.55.1 | Ribosomal protein L22 |
| View | Download | 0.202 | N/A | N/A | d.89.1 | Origin of replication-binding domain, RBD-like |
| View | Download | 0.201 | N/A | N/A | c.47.1 | Thioredoxin-like |
| View | Download | 0.200 | N/A | N/A | a.1.1 | Globin-like |
