| Protein: | CDC60 |
| Organism: | Saccharomyces cerevisiae |
| Length: | 1090 amino acids |
| Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CDC60.
| Description | E-value | Query Range |
Subject Range |
|
|
0.0 | [1..1090] | [1..1090] |
|
|
0.0 | [2..1090] | [15..1109] |
|
|
0.0 | [8..1084] | [41..1113] |
|
|
0.0 | [5..990] | [10..885] |
|
|
0.0 | [1..1090] | [1..1096] |
|
|
0.0 | [8..1084] | [5..1079] |
|
|
0.0 | [5..984] | [10..887] |
|
Region A: Residues: [1-8] |
1 11 21 31 41 51
| | | | | |
1 MSSGLVLE
|
|
Region B: Residues: [787-815] |
1 11 21 31 41 51
| | | | | |
1 AEEITKESNL RTGEITDFFD IAFEHEMNA
|
|
Region C: Residues: [841-862] |
1 11 21 31 41 51
| | | | | |
1 QAARDYYREA SGVMHKDLIA RY
|
|
Region D: Residues: [901-912] |
1 11 21 31 41 51
| | | | | |
1 SKPVDKGVLA AL
|
| Detection Method: |  |
| Confidence: | 1000.0 |
| Match: | 1ffyA_ |
| Description: | Isoleucyl-tRNA synthetase (IleRS) |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [9-59] |
1 11 21 31 41 51
| | | | | |
1 NTARRDALIA IEKKYQKIWA EEHQFEIDAP SIEDEPITMD SEELHRTYPK F
|
|
Region B: Residues: [71-99] |
1 11 21 31 41 51
| | | | | |
1 VMHAGHCFTL SKVEFSIGFE RMNGKRALF
|
|
Region C: Residues: [146-159] |
1 11 21 31 41 51
| | | | | |
1 KDHEDVTKFK AKKS
|
|
Region D: Residues: [720-786] |
1 11 21 31 41 51
| | | | | |
1 NGHLMLNNSK MSKSTGNFMT LEQTVEKFGA DAARIAFADA GDTVEDANFD ESNANAAILR 60
61 LFNLKEW
|
|
Region E: Residues: [816-840] |
1 11 21 31 41 51
| | | | | |
1 LIEKTYEQYA LTNYKNALKY GLFDF
|
|
Region F: Residues: [863-900] |
1 11 21 31 41 51
| | | | | |
1 IETQALLLAP IAPHFAEYIY REVLGNQTSV QNAKFPRA
|
|
Region G: Residues: [913-999] |
1 11 21 31 41 51
| | | | | |
1 DYLRNLQRSI REGEGQALKK KKGKSAEIDA SKPVKLTLLI SESFPEWQSQ CVEIVRKLFS 60
61 EQTLDDNKKV REHIEPKEMK RAMPFIS
|
| Detection Method: | |
| Confidence: | 1000.0 |
| Match: | 1ffyA_ |
| Description: | Isoleucyl-tRNA synthetase (IleRS) |
| Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [60-70] |
1 11 21 31 41 51
| | | | | |
1 MSSMAYPYMN G
|
|
Region B: Residues: [100-145] |
1 11 21 31 41 51
| | | | | |
1 PLGFHCTGMP ILACADKLKR EAELFGKNFD NVPAEEEEIK EETPAE
|
|
Region C: Residues: [160-206] |
1 11 21 31 41 51
| | | | | |
1 KAAAKKGRGK YQFEIMLQLG IPREEIIKFA DAKYWLTYFP PLCESDC
|
|
Region D: Residues: [545-719] |
1 11 21 31 41 51
| | | | | |
1 QWYVDYGEES WKKQAIECLE GMQLFAPEVK NAFEGVLDWL KNWAVCRTYG LGTRLPWDEK 60
61 YLVESLSDST IYQSFYTIAH LLFKDYYGNE IGPLGISADQ MTDEVFDYIF QHQDDVKNTN 120
121 IPLPALQKLR REFEYFYPLD VSISGKDLIP NHLTFFIYTH VALFPKKFWP KGIRA
|
| Detection Method: | |
| Confidence: | 1000.0 |
| Match: | 1ffyA_ |
| Description: | Isoleucyl-tRNA synthetase (IleRS) |
| Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [207-544] |
1 11 21 31 41 51
| | | | | |
1 TSLGARIDWR RSFVTTDANP YYDAFIRWQM NKLKAAGKIK FGERYTIYSE KDGQACMDHD 60
61 RQSGEGVTPQ EYIGVKIEAL EFADDAAKII DSSSDLDKSK KFYFVAATLR PETMYGQTCC 120
121 FVSPTIEYGI FDAGDSYFIT TERAFKNMSY QKLTPKRGFY KPIVTVPGKA FIGTKIHAPQ 180
181 SVYPELRILP METVIATKGT GVVTCVPSNS PDDYITTKDL LHKPEYYGIK PEWIDHEIVP 240
241 IMHTEKYGDL TAKAIVEEKK IQSPKDKNLL AEAKKIAYKE DYYTGTMIYG PYKGEKVEQA 300
301 KNKVKADMIA AGEAFVYNEP ESQVMSRSGD DCIVSLED
|
| Detection Method: | |
| Confidence: | 1000.0 |
| Match: | 1ffyA_ |
| Description: | Isoleucyl-tRNA synthetase (IleRS) |
| Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [1000-1090] |
1 11 21 31 41 51
| | | | | |
1 LLKQRLANEK PEDVFERELQ FSEIDTVKAA ARNVKKAAQA LKIAEFSAIS FPYGAKTGKD 60
61 IFTGEEVEIP PVTKIVENAV PGNPGVVFQN I
|
| Detection Method: | |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
