| Protein: | COX11 |
| Organism: | Saccharomyces cerevisiae |
| Length: | 300 amino acids |
| Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for COX11.
| Description | E-value | Query Range |
Subject Range |
|
|
0.0 | [1..300] | [1..300] |
|
|
2.0E-81 | [42..258] | [2..225] |
|
|
2.0E-77 | [60..263] | [72..272] |
|
|
6.0E-75 | [40..258] | [490..722] |
|
|
4.0E-68 | [80..257] | [2..181] |
|
|
6.0E-68 | [76..268] | [45..229] |
|
|
7.0E-68 | [75..258] | [58..244] |
|
Region A: Residues: [1-300] |
1 11 21 31 41 51
| | | | | |
1 MIRICPIVRS KVPLLGTFLR SDSWLAPHAL ALRRAICKNV ALRSYSVNSE QPKHTFDISK 60
61 LTRNEIQQLR ELKRARERKF KDRTVAFYFS SVAVLFLGLA YAAVPLYRAI CARTGFGGIP 120
121 ITDRRKFTDD KLIPVDTEKR IRISFTSEVS QILPWKFVPQ QREVYVLPGE TALAFYKAKN 180
181 YSDKDIIGMA TYSIAPGEAA QYFNKIQCFC FEEQKLAAGE EIDMPVFFFI DPDFASDPAM 240
241 RNIDDIILHY TFFRAHYGDG TAVSDSKKEP EMNADEKAAS LANAAILSPE VIDTRKDNSN 300
301
|
| Detection Method: |  |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [83-300] |
1 11 21 31 41 51
| | | | | |
1 RTVAFYFSSV AVLFLGLAYA AVPLYRAICA RTGFGGIPIT DRRKFTDDKL IPVDTEKRIR 60
61 ISFTSEVSQI LPWKFVPQQR EVYVLPGETA LAFYKAKNYS DKDIIGMATY SIAPGEAAQY 120
121 FNKIQCFCFE EQKLAAGEEI DMPVFFFIDP DFASDPAMRN IDDIILHYTF FRAHYGDGTA 180
181 VSDSKKEPEM NADEKAASLA NAAILSPEVI DTRKDNSN
|
| Detection Method: | |
| Confidence: | 63.30103 |
| Match: | 1so9A |
| Description: | Solution Structure of apoCox11, 30 structures |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| structural molecule activity | 4.47117060684776 | bayes_pls_golite062009 |
| cytochrome-c oxidase activity | 1.63692440621606 | bayes_pls_golite062009 |
| oxidoreductase activity, acting on heme group of donors | 1.63692440621606 | bayes_pls_golite062009 |
| oxidoreductase activity, acting on heme group of donors, oxygen as acceptor | 1.63692440621606 | bayes_pls_golite062009 |
| heme-copper terminal oxidase activity | 1.45348828463274 | bayes_pls_golite062009 |
| binding | 1.26238051646126 | bayes_pls_golite062009 |
| oxidoreductase activity | 1.03472539732492 | bayes_pls_golite062009 |
| hydrogen ion transmembrane transporter activity | 0.401392171756694 | bayes_pls_golite062009 |
| monovalent inorganic cation transmembrane transporter activity | 0.312235007946628 | bayes_pls_golite062009 |
| copper ion binding | 0.19463795974816 | bayes_pls_golite062009 |
| catalytic activity | 0.176396048613815 | bayes_pls_golite062009 |
| inorganic cation transmembrane transporter activity | 0.0231690475060109 | bayes_pls_golite062009 |
| cation transmembrane transporter activity | 0.0170756391184381 | bayes_pls_golite062009 |
