YRC Public Data Repository - Protein Structure Prediction

Protein:	ELP4
Organism:	Saccharomyces cerevisiae
Length:	456 amino acids
Reference:	Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for ELP4.

Description	E-value	Query Range	Subject Range
gi\|190407854 - gi\|190407854\|gb\|EDV11119.1\| RNA polymerase II Elongator protein subunit [Saccharomyces cerevisiae RM... ELP4_YEAST - Elongator complex protein 4 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=ELP4 PE=1 SV... ELP4 - Subunit of Elongator complex, which is required for modification of wobble nucleosides in tRNA; requ...	0.0	[1..456]	[1..456]
ELP4 - elongation protein 4 homolog (S. cerevisiae) gi\|117645740, gi... - gi\|208967779\|dbj\|BAG72535.1\| elongation protein 4 homolog [synthetic construct], gi\|117646530\|emb\|CA...	0.0	[47..456]	[24..424]
gi\|26329633 - gi\|26329633\|dbj\|BAC28555.1\| unnamed protein product [Mus musculus]	0.0	[24..456]	[22..422]
gi\|15887001 - gi\|15887001\|emb\|CAC88760.1\| PAX neighbour protein [Takifugu rubripes]	0.0	[40..456]	[3..408]
gi\|39979129, gi\|... - gi\|39979129\|emb\|CAE85503.1\| related to DNA-directed RNA polymerase II elongator protein subunit [Neu... gi\|85109005 - gi\|85109005\|ref\|XP_962701.1\| hypothetical protein NCU08031 [Neurospora crassa OR74A]	2.0E-90	[49..433]	[11..382]
ELP4_SCHPO - Elongator complex protein 4 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=elp4 PE=3 SV=1 SPCC11E10.06c - RNA polymerase II elongator complex subunit Elp4	2.0E-86	[65..456]	[4..361]

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Predicted Domain #1

Region A:
Residues: [1-302]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSFRKRGEIL NDRGSGLRGP LLRGPPRTSS TPLRTGNRRA PGNVPLSDTT ARLKKLNIAD  60
   61 ESKTKMGLDS SHVGVRPSPA TSQPTTSTGS ADLDSILGHM GLPLGNSVLV EEQSTTEFHS 120
  121 ILGKLFAAQG IVHNRISDSS ADKTRNGDTH VIVLSLNQMF AKELPGIYKG SRKQMKKNLI 180
  181 SEEESKVTVQ NLNETQRSTP SRYKDLKIAW KYKLADEKRL GSPDRDDIQQ NSEYKDYNHQ 240
  241 FDITTRLMPA PIASELTFIA PTQPVSTILS QIEQTIKRND KKLIRIVIPS LLHPAMYPPK 300
  301 MF

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [303-456]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 ESSEIIGLMH GVRSLVKKYY ERVVLFASIS IDIITPPLLV LLRNMFDSVI NLEPFNQEMT  60
   61 EFLERVYKSQ PGKIQHGLVH ILKLPVFTDR GEMRVLKSEW AFKNGRKKFE IEQWGIPVDD 120
  121 AEGSAASEQS HSHSHSDEIS HNIPAKKTKI SLDY

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits