YRC Public Data Repository - Protein Structure Prediction

Protein:	GPI2
Organism:	Saccharomyces cerevisiae
Length:	280 amino acids
Reference:	Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for GPI2.

Description	E-value	Query Range	Subject Range
PIGC - phosphatidylinositol glycan anchor biosynthesis, class C gi\|61361835, gi\|... - gi\|61361840\|gb\|AAX42112.1\| phosphatidylinositol glycan class C [synthetic construct], gi\|61361835\|gb...	5.0E-77	[5..280]	[13..291]
gi\|30584777, gi\|... - gi\|60653763\|gb\|AAX29575.1\| phosphatidylinositol glycan class C [synthetic construct], gi\|60653761\|gb...	7.0E-77	[5..280]	[13..291]
PIGC_MOUSE - Phosphatidylinositol N-acetylglucosaminyltransferase subunit C OS=Mus musculus GN=Pigc PE=2 SV=1	8.0E-77	[5..280]	[13..291]
gi\|190407877 - gi\|190407877\|gb\|EDV11142.1\| phosphatidylinositol N-acetylglucosaminyltransferase GPI2 subunit [Sacch... GPI2 - Protein involved in the synthesis of N-acetylglucosaminyl phosphatidylinositol (GlcNAc-PI), the firs... gi\|151942720 - gi\|151942720\|gb\|EDN61066.1\| glycosylphosphatidylinositol anchor biosynthesis [Saccharomyces cerevisi... gi\|207340538 - gi\|207340538\|gb\|EDZ68861.1\| YPL076Wp-like protein [Saccharomyces cerevisiae AWRI1631] GPI2_YEAST - Phosphatidylinositol N-acetylglucosaminyltransferase GPI2 subunit OS=Saccharomyces cerevisiae (strai...	5.0E-74	[1..280]	[1..280]
gi\|23092908, gi\|... - gi\|24656747\|ref\|NP_647804.1\| CG12077 [Drosophila melanogaster], gi\|23092908\|gb\|AAF47758.2\| CG12077 [...	5.0E-70	[3..280]	[9..287]
CE23990 - status:Partially_confirmed UniProt:O01259 protein_id:CAA92490.2	3.0E-63	[6..277]	[7..277]
GPI2_SCHPO - Phosphatidylinositol N-acetylglucosaminyltransferase GPI2 subunit OS=Schizosaccharomyces pombe (stra... gpi2 - pig-C	3.0E-60	[3..279]	[35..319]

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Predicted Domain #1

Region A:
Residues: [1-184]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTRSPWKRLL WLKQEYPDNY TDPSFIELRA RQKAESNQKS DRKLSEAARA QIRLDFISFY  60
   61 QTILNTSFIY ITFTYIYYYG FDPIPPTIFL SFITLIISRT KVDPLLSSFM DVKSSLIITF 120
  121 AMLTLSPVLK SLSKTTASDS IWTLSFWLTL WYIFVISSTK SKDKPSNLST NILVALVAVL 180
  181 SSRL

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [185-280]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 STTIDVFCFL LICIQLNIIL PTYLSVTNKV VPIISNIIVY SFLNVALGWI YMLLIFFASV  60
   61 FYITVLPKWF IYWKINYHKR DNDLLSTWDA RTPILD

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits