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View Structure Prediction Details

Protein: HSH49
Organism: Saccharomyces cerevisiae
Length: 213 amino acids
Reference: Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for HSH49.

Description E-value Query
Range		 Subject
Range
PABP1_BOVIN - Polyadenylate-binding protein 1 OS=Bos taurus GN=PABPC1 PE=2 SV=1
gi|109087089 - gi|109087089|ref|XP_001098239.1| PREDICTED: poly(A) binding protein, cytoplasmic 1 isoform 2 [Macaca...
gi|123993665, gi... - gi|168278070|dbj|BAG11013.1| polyadenylate-binding protein 1 [synthetic construct], gi|123999981|gb|...
gi|194036975 - gi|194036975|ref|XP_001927782.1| PREDICTED: similar to Polyadenylate-binding protein 1 (Poly(A)-bind...
PABPC1 - poly(A) binding protein, cytoplasmic 1
gi|73974130, gi|... - gi|73974178|ref|XP_857695.1| PREDICTED: similar to Polyadenylate-binding protein 1 (Poly(A)-binding ...
 1.0E-71 [1..208] [1..197]
PABP1_MOUSE - Polyadenylate-binding protein 1 OS=Mus musculus GN=Pabpc1 PE=1 SV=2
 1.0E-71 [1..208] [1..197]
PABP1_RAT - Polyadenylate-binding protein 1 OS=Rattus norvegicus GN=Pabpc1 PE=1 SV=1
 2.0E-71 [1..208] [1..197]
PAB1_XENLA, PABP... - (P20965) Polyadenylate-binding protein 1 (Poly(A)-binding protein 1) (PABP 1), (P20965) Polyadenylat...
 3.0E-71 [1..208] [1..197]
gi|2665654 - gi|2665654|gb|AAB88449.1| polyadenylate binding protein [Petromyzon marinus]
 1.0E-70 [1..208] [1..197]

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Predicted Domain #1
Region A:
Residues: [1-88] 
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNYSADSGNT VYVGNIDPRI TKEQLYELFI QINPVLRIKY PKDKVLQAYQ GYAFIEFYNQ  60
   61 GDAQYAIKIM NNTVRLYDRL IKVRQVTN

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 204.211549
Match: 1cvjA_
Description: Poly(A)-binding protein
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
RNA binding 6.73097473547076 bayes_pls_golite062009
6.62953239642182 bayes_pls_golite062009
mRNA binding 5.29759606920196 bayes_pls_golite062009
nucleic acid binding 4.50398990564944 bayes_pls_golite062009
binding 4.16717332578111 bayes_pls_golite062009
snRNA binding 4.06596327298973 bayes_pls_golite062009
poly-pyrimidine tract binding 3.11990160533699 bayes_pls_golite062009
U1 snRNA binding 3.02511982045347 bayes_pls_golite062009
single-stranded RNA binding 2.93798024346416 bayes_pls_golite062009
transcription regulator activity 2.18211199677674 bayes_pls_golite062009
DNA binding 1.73925834998328 bayes_pls_golite062009
structural molecule activity 1.56454315220334 bayes_pls_golite062009
U2 snRNA binding 1.34078165372485 bayes_pls_golite062009
protein binding 1.10597581610211 bayes_pls_golite062009
transcription factor activity 0.873765500321315 bayes_pls_golite062009
mRNA 3'-UTR binding 0.591700155096213 bayes_pls_golite062009
sequence-specific DNA binding 0.294937517750882 bayes_pls_golite062009

Predicted Domain #2
Region A:
Residues: [89-213] 
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 STGTTNLPSN ISKDMILPIA KLFIKNLADS IDSDQLVKIF NKFGKLIREP EIFYLSNGKL  60
   61 KCAYVYFEDF EKADLAIKSL NNQLVANNRI TVDYAFKENG KGNAKYGDDV DRLLNKEALK 120
  121 HNMLK

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 204.211549
Match: 1cvjA_
Description: Poly(A)-binding protein
Matching Structure (courtesy of the PDB):
YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle