| Protein: | SNU66 |
| Organism: | Saccharomyces cerevisiae |
| Length: | 587 amino acids |
| Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SNU66.
| Description | E-value | Query Range |
Subject Range |
|
|
0.0 | [1..587] | [1..587] |
|
|
0.0 | [6..571] | [99..724] |
|
|
0.0 | [6..571] | [100..726] |
|
|
0.0 | [6..571] | [75..709] |
|
|
0.0 | [6..571] | [117..758] |
|
|
0.0 | [6..571] | [117..758] |
|
|
0.0 | [5..571] | [271..911] |
|
Region A: Residues: [1-411] |
1 11 21 31 41 51
| | | | | |
1 MNKTENLSIE ETNEIREKLG MKPIPVFQEK NTDHKESLSI EETNELRASL GLKLIPPQQN 60
61 FNSSPPNVHN TSKIDELREK ITKFQKKANA PLRMAHLLEE TNVNDDSSWL ENMDAIPSSH 120
121 ESKRSSTLPR KGATKEDENI DLHNVQVSYN IEALSPKKDT ILTLKESSIF DDTDSTEVLE 180
181 NVKAAEENAD REKLRLRQMN KDRRQKKKIL NVSSLDIEEE EEGEKHSITT THLIIGAEQG 240
241 VMKAPNTISA KPPTGKVKVN FDSANNMSDE DGGDFKPLKI KKRKIKDPRS TKARKSKITD 300
301 KMEIVKLVDE DESLSWMEEE QPVTIINPRT SSNNELKGPE DLAREIEKAR DEEKRRTESI 360
361 LKMREISNSI VVDEKVTFLN TLDTSLSERS ATENKVKVHG EGEKNIGDVT N
|
| Detection Method: |  |
| Confidence: | 2.09691 |
| Match: | 1i84S_ |
| Description: | Heavy meromyosin subfragment |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [412-587] |
1 11 21 31 41 51
| | | | | |
1 GHTKEGSGNN TLTEAVNNEP NYEGDAENAP NFFSGLASTL GYLRKKSVFT TGDVDLKPGK 60
61 DVNNSESLRR DVRNKEHTGT GTYTKDKLHG LEQFTSSDSS NANTHSKRQD HYDPDIKLVY 120
121 RDEKGNRLTT KEAYKKLSQK FHGTKSNKKK RAKMKSRIEA RKNTPENGSL FEFDDN
|
| Detection Method: | |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [271-438] |
1 11 21 31 41 51
| | | | | |
1 DGGDFKPLKI KKRKIKDPRS TKARKSKITD KMEIVKLVDE DESLSWMEEE QPVTIINPRT 60
61 SSNNELKGPE DLAREIEKAR DEEKRRTESI LKMREISNSI VVDEKVTFLN TLDTSLSERS 120
121 ATENKVKVHG EGEKNIGDVT NGHTKEGSGN NTLTEAVNNE PNYEGDAE
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [439-587] |
1 11 21 31 41 51
| | | | | |
1 NAPNFFSGLA STLGYLRKKS VFTTGDVDLK PGKDVNNSES LRRDVRNKEH TGTGTYTKDK 60
61 LHGLEQFTSS DSSNANTHSK RQDHYDPDIK LVYRDEKGNR LTTKEAYKKL SQKFHGTKSN 120
121 KKKRAKMKSR IEARKNTPEN GSLFEFDDN
|
| Detection Method: | |
| Confidence: | 0.96 |
| Match: | 1gh6A |
| Description: | Large T antigen, the N-terminal J domain |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| binding | 1.976140922616 | bayes_pls_golite062009 |
| protein binding | 1.24691264244807 | bayes_pls_golite062009 |
| transcription regulator activity | 1.22205034569359 | bayes_pls_golite062009 |
| nucleic acid binding | 0.956364358495558 | bayes_pls_golite062009 |
| DNA binding | 0.894959464232481 | bayes_pls_golite062009 |
| catalytic activity | 0.137993331191769 | bayes_pls_golite062009 |
