YRC Public Data Repository - Protein Structure Prediction

Protein:	RPS10A
Organism:	Saccharomyces cerevisiae
Length:	105 amino acids
Reference:	Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RPS10A.

Description	E-value	Query Range	Subject Range
gi\|90075202 - gi\|90075202\|dbj\|BAE87281.1\| unnamed protein product [Macaca fascicularis] gi\|114606982, gi... - gi\|114606984\|ref\|XP_001171673.1\| PREDICTED: hypothetical protein isoform 4 [Pan troglodytes], gi\|114... tr\|G1TPV3\|G1TPV3... - pep:novel chromosome:oryCun2:12:24580428:24585684:-1 gene:ENSOCUG00000011373 transcript:ENSOCUT00000... RPS10 - ribosomal protein S10 tr\|M3WMF9\|M3WMF9... - Ribosomal protein S10 OS=Felis catus GN=RPS10 PE=4 SV=1 gi\|123997305, gi... - gi\|60655877\|gb\|AAX32502.1\| ribosomal protein S10 [synthetic construct], gi\|123997305\|gb\|ABM86254.1\| ... gi\|147744664 - gi\|147744664\|gb\|ABQ51199.1\| ribosomal protein S10 [Capra hircus] gi\|109070823, gi... - gi\|109070823\|ref\|XP_001116493.1\| PREDICTED: similar to 40S ribosomal protein S10 isoform 1 [Macaca m... ENSCJAT000000435... - null, null RS10_BOVIN - 40S ribosomal protein S10 OS=Bos taurus GN=RPS10 PE=2 SV=1	2.0E-51	[1..104]	[1..107]
RS10_RAT - 40S ribosomal protein S10 OS=Rattus norvegicus GN=Rps10 PE=2 SV=1 gi\|54035601 - gb\|AAH83988.1\| Unknown (protein for MGC:98089) [Xenopus laevis] RS10_MOUSE - 40S ribosomal protein S10 OS=Mus musculus GN=Rps10 PE=1 SV=1	2.0E-51	[1..104]	[1..107]
RS10_XENLA - 40S ribosomal protein S10 OS=Xenopus laevis GN=rps10 PE=1 SV=1	1.0E-49	[1..104]	[1..107]
RS10_LUMRU - 40S ribosomal protein S10 OS=Lumbricus rubellus GN=RPS10 PE=2 SV=1	2.0E-48	[1..104]	[1..105]
RS10_ICTPU - 40S ribosomal protein S10 OS=Ictalurus punctatus GN=rps10 PE=2 SV=1	1.0E-47	[1..104]	[1..108]
RS10_SPOFR - 40S ribosomal protein S10 OS=Spodoptera frugiperda GN=RpS10 PE=2 SV=1	3.0E-44	[1..100]	[1..102]
RS10_ORYSA - (Q9AYP4) 40S ribosomal protein S10 gi\|12246885 - gi\|12246885\|dbj\|BAB21002.1\| ribosomal protein S10 [Oryza sativa Japonica Group]	4.0E-43	[1..101]	[1..101]
rps1002 - 40S ribosomal protein S10 RS10B_SCHPO - 40S ribosomal protein S10-B OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=rps1002 PE=3 S...	3.0E-42	[1..104]	[1..108]

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Predicted Domain #1

Region A:
Residues: [1-105]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLMPKEDRNK IHQYLFQEGV VVAKKDFNQA KHEEIDTKNL YVIKALQSLT SKGYVKTQFS  60
   61 WQYYYYTLTE EGVEYLREYL NLPEHIVPGT YIQERNPTQR PQRRY

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	69.017729
Match:	PF03501
Description:	Plectin/S10 domain

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted functions:

Term	Confidence	Notes
structural constituent of ribosome	5.31568733625259	bayes_pls_golite062009
structural molecule activity	5.08906334129014	bayes_pls_golite062009
transcription regulator activity	3.15604421023994	bayes_pls_golite062009
nucleic acid binding	3.03746013592931	bayes_pls_golite062009
DNA binding	2.94000725003786	bayes_pls_golite062009
binding	2.35442673361809	bayes_pls_golite062009
transcription factor activity	2.26980753972323	bayes_pls_golite062009
protein binding	1.12485453632591	bayes_pls_golite062009
sequence-specific DNA binding	0.948991080726164	bayes_pls_golite062009
transcription activator activity	0.818477312720578	bayes_pls_golite062009
transcription repressor activity	0.679859821399589	bayes_pls_golite062009
RNA binding	0.352569950847387	bayes_pls_golite062009
RNA polymerase II transcription factor activity	0.205052011867554	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: