| Protein: | YTM1 |
| Organism: | Saccharomyces cerevisiae |
| Length: | 460 amino acids |
| Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for YTM1.
| Description | E-value | Query Range |
Subject Range |
|
|
0.0 | [2..459] | [836..1253] |
|
|
0.0 | [9..459] | [1037..1486] |
|
Region A: Residues: [1-404] |
1 11 21 31 41 51
| | | | | |
1 MTEDKSQVKI RFFTREKDEL LHVQDTPMYA PISLKRYGLS EIVNHLLGSE KPVPFDFLIE 60
61 GELLRTSLHD YLTKKGLSSE ASLNVEYTRA ILPPSYLNSF SNEDWVSSLD VGDGSKHIIS 120
121 GSYDGIVRTW DLSGNVQKQY SGHSGPIRAV KYISNTRLVS AGNDRTLRLW KTKNDDLKLT 180
181 SQQQAQEDDD DEVNIEDGKT LAILEGHKAP VVSIDVSDNS RILSASYDNS IGFWSTIYKE 240
241 MTVVDPLEDI NNPNNKISTA ARKRRKLTMK DGTIRRRAPL SLLESHTAPV EQVIFDSTDN 300
301 TVGYSVSQDH TIKTWDLVTA RCIDTRTTSY SLLSIAQLST LNLLACGSSA RHITLHDPRV 360
361 GASSKVTQQQ LIGHKNFVSS LDTCPENEYI LCSGSHDGTV KVWD
|
| Detection Method: |  |
| Confidence: | 93.06601 |
| Match: | 1gg2B_ |
| Description: | beta1-subunit of the signal-transducing G protein heterotrimer |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [405-460] |
1 11 21 31 41 51
| | | | | |
1 VRSTSPMYTI TREDKSVQKG VNDKVFAVKW AEKVGIISAG QDKKIQINKG DNIFKN
|
| Detection Method: | |
| Confidence: | 150.0 |
| Match: | 1erjA_ |
| Description: | Tup1, C-terminal domain |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| snoRNA binding | 3.51833501249106 | bayes_pls_golite062009 |
| 3.41022148055944 | bayes_pls_golite062009 | |
| RNA binding | 3.0829625416797 | bayes_pls_golite062009 |
| binding | 2.42570478946173 | bayes_pls_golite062009 |
| histone methyltransferase activity (H3-K4 specific) | 2.299832037975 | bayes_pls_golite062009 |
| cytoskeletal protein binding | 2.20122168933317 | bayes_pls_golite062009 |
| S-adenosylmethionine-dependent methyltransferase activity | 1.95039718468175 | bayes_pls_golite062009 |
| actin binding | 1.40054662654509 | bayes_pls_golite062009 |
| transcription regulator activity | 1.25687092973217 | bayes_pls_golite062009 |
| protein binding | 1.21879977456466 | bayes_pls_golite062009 |
| nucleic acid binding | 1.20712373307552 | bayes_pls_golite062009 |
| structural molecule activity | 1.20572493724069 | bayes_pls_golite062009 |
| tubulin binding | 1.10875870970504 | bayes_pls_golite062009 |
| microtubule binding | 1.03769395387791 | bayes_pls_golite062009 |
| DNA binding | 0.711274653406079 | bayes_pls_golite062009 |
| ligase activity | 0.280267687917718 | bayes_pls_golite062009 |
| transcription factor activity | 0.243992994917491 | bayes_pls_golite062009 |
| dynein binding | 0.180120691665679 | bayes_pls_golite062009 |
| histone binding | 0.166694897714113 | bayes_pls_golite062009 |
| chromatin binding | 0.145491963066342 | bayes_pls_golite062009 |
| mRNA binding | 0.0519838181830878 | bayes_pls_golite062009 |
|
Region A: Residues: [397-460] |
1 11 21 31 41 51
| | | | | |
1 DGTVKVWDVR STSPMYTITR EDKSVQKGVN DKVFAVKWAE KVGIISAGQD KKIQINKGDN 60
61 IFKN
|
| Detection Method: | |
| Confidence: | 28.522879 |
| Match: | 2pm6B |
| Description: | No description for 2pm6B was found. |
