YRC Public Data Repository - Protein Structure Prediction

Protein:	WTM2
Organism:	Saccharomyces cerevisiae
Length:	467 amino acids
Reference:	Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for WTM2.

Description	E-value	Query Range	Subject Range
gi\|53764690, gi\|... - gi\|75908402\|ref\|YP_322698.1\| peptidase C14, caspase catalytic subunit p20 [Anabaena variabilis ATCC ...	318.0	[0..29]	[467..981]
YY46_NOSS1 - Uncharacterized WD repeat-containing protein alr3466 OS=Nostoc sp. (strain PCC 7120 / UTEX 2576) GN=... gi\|25530855 - pir\|\|AC2239 WD-40 repeat protein [imported] - Nostoc sp. (strain PCC 7120)	316.0	[0..33]	[453..1035]
WTM1 - Transcriptional modulator involved in regulation of meiosis, silencing, and expression of RNR genes;... WTM1_YEAST - Transcriptional modulator WTM1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=WTM1 PE=1... gi\|190407538 - gi\|190407538\|gb\|EDV10805.1\| transcriptional modulator WTM1 [Saccharomyces cerevisiae RM11-1a] gi\|151945318 - gi\|151945318\|gb\|EDN63561.1\| transcriptional modulator [Saccharomyces cerevisiae YJM789] gi\|207341008 - gi\|207341008\|gb\|EDZ69185.1\| YOR230Wp-like protein [Saccharomyces cerevisiae AWRI1631]	315.0	[0..15]	[455..7]
gi\|17225208 - gi\|17225208\|gb\|AAL37300.1\|AF323584_1 beta transducin-like protein HET-E2C*40 [Podospora anserina]	315.0	[0..35]	[453..846]
gi\|186464325, gi... - gi\|23128981\|ref\|ZP_00110817.1\| COG2319: FOG: WD40 repeat [Nostoc punctiforme PCC 73102], gi\|18668187...	313.0	[0..15]	[467..1204]
gi\|37523925, gi\|... - gi\|37523925\|ref\|NP_927302.1\| WD repeat-containing protein [Gloeobacter violaceus PCC 7421], gi\|35214...	309.0	[0..22]	[453..600]

Back

Predicted Domain #1

Region A:
Residues: [1-112]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAKSKSSQGA SGARRKPAPS LYQHISSFKP QFSTRVDDVL HFSKTLTWRS EIIPDKSKGT  60
   61 LTTSLLYSQG SDIYEIDTTL PLKTFYDDDD DDDNDDDDEE GNGKTKSAAT PN

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [113-467]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PEYGDAFQDV EGKPLRPKWI YQGETVAKMQ YLESSDDSTA IAMSKNGSLA WFRDEIKVPV  60
   61 HIVQEMMGPA TRYSSIHSLT RPGSLAVSDF DVSTNMDTVV KSQSNGYEED SILKIIDNSD 120
  121 RPGDILRTVH VPGTNVAHSV RFFNNHLFAS CSDDNILRFW DTRTADKPLW TLSEPKNGRL 180
  181 TSFDSSQVTE NLFVTGFSTG VIKLWDARAV QLATTDLTHR QNGEEPIQNE IAKLFHSGGD 240
  241 SVVDILFSQT SATEFVTVGG TGNVYHWDME YSFSRNDDDN EDEVRVAAPE ELQGQCLKFF 300
  301 HTGGTRRSSN QFGKRNTVAL HPVINDFVGT VDSDSLVTAY KPFLASDFIG RGYDD

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	44.522879
Match:	1gg2B
Description:	beta1-subunit of the signal-transducing G protein heterotrimer
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits