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View Structure Prediction Details

Protein: NOC2
Organism: Saccharomyces cerevisiae
Length: 710 amino acids
Reference: Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for NOC2.

Description E-value Query
Range
Subject
Range
gi|207341039 - gi|207341039|gb|EDZ69207.1| YOR206Wp-like protein [Saccharomyces cerevisiae AWRI1631]
NOC2 - Protein that forms a nucleolar complex with Mak21p that binds to 90S and 66S pre-ribosomes, as well ...
gi|190407517 - gi|190407517|gb|EDV10784.1| nucleolar complex protein 2 [Saccharomyces cerevisiae RM11-1a]
NOC2_YEAST - Nucleolar complex protein 2 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=NOC2 PE=1 SV...
0.0 [1..710] [1..710]
gi|7507776 - gi|7507776|pir||T16867 probable cytochrome P450 T13C5.1 [similarity] - Caenorhabditis elegans
0.0 [63..706] [13..682]
NOC2L - nucleolar complex associated 2 homolog (S. cerevisiae)
0.0 [63..706] [8..677]
NOC2L_MOUSE - Nucleolar complex protein 2 homolog OS=Mus musculus GN=Noc2l PE=1 SV=2
0.0 [60..709] [5..681]
SPAC1142.04 - Noc2p-Noc3p complex subunit Noc2 family
YKY4_SCHPO - Uncharacterized NOC2 family protein C1142.04 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) ...
0.0 [18..709] [14..699]
YU20_ARATH, NOC2... - (Q9ZPV5) Hypothetical UPF0120 protein At2g18220, Nucleolar complex protein 2 homolog OS=Arabidopsis ...
0.0 [39..682] [4..634]

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Predicted Domain #1
Region A:
Residues: [1-251]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGKVSKSTKK FQSKHLKHTL DQRRKEKIQK KRIQGRRGNK TDQEKADAAG TREQQQLKKS  60
   61 AKEEVFKDMS VETFFEKGIE IPKENKKLKK KTTKEQSDED SSSSEEEEDM GQSMAKLAEK 120
  121 DPEFYKYLEE NDKDLLDFAG TNPLDGIDSQ DEGEDAERNS NIEEKSEQME LEKEKIELSL 180
  181 KLVRKWKKQL HDSPSLKLLR NIISAFKVAV NLNKEENIED YKYAITDEKA FHELMFMVLK 240
  241 DVPQAIQKMA P

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [252-426]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 YKIVKGARTL PNGGNVSRVS SIVKSHAGSL LILLNDITNT ETAALVLHSV NELMPYLLSY  60
   61 RRILKELIKS IVGVWSTTRE LETQIASFAF LINTTKEFKK SMLETTLKTT YSTFIKSCRK 120
  121 TNMRSMPLIN FQKNSAAELF GIDEVLGYQV GFEYIRQLAI HLRNTMNATT KKSSK

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

    MCM
Score
GO
Score
GO
Term
SCOP
Match
SCOP Description
View Download 0.830 0.297 ribosome assembly a.118.1 ARM repeat
View Download 0.726 0.297 ribosome assembly a.118.9 ENTH/VHS domain
View Download 0.599 0.297 ribosome assembly a.47.2 t-snare proteins
View Download 0.830 0.297 ribosome assembly a.118.1 ARM repeat
View Download 0.726 0.297 ribosome assembly a.118.9 ENTH/VHS domain
View Download 0.653 0.297 ribosome assembly a.118.9 ENTH/VHS domain
View Download 0.599 0.297 ribosome assembly a.47.2 t-snare proteins
View Download 0.558 0.297 ribosome assembly a.118.9 ENTH/VHS domain
View Download 0.558 0.297 ribosome assembly a.118.9 ENTH/VHS domain
View Download 0.535 0.297 ribosome assembly f.1.2 Diphtheria toxin, middle domain
View Download 0.419 0.297 ribosome assembly f.1.4 Bcl-2 inhibitors of programmed cell death
View Download 0.400 0.297 ribosome assembly a.118.8 TPR-like
View Download 0.387 0.297 ribosome assembly a.47.2 t-snare proteins
View Download 0.356 0.297 ribosome assembly a.80.1 DNA polymerase III clamp loader subunits, C-terminal domain
View Download 0.343 0.297 ribosome assembly a.118.9 ENTH/VHS domain
View Download 0.340 0.297 ribosome assembly a.118.12 Ran-GTPase activating protein 1 (RanGAP1), C-terminal domain
View Download 0.331 0.297 ribosome assembly a.118.8 TPR-like
View Download 0.324 0.297 ribosome assembly a.1.1 Globin-like
View Download 0.293 0.297 ribosome assembly f.1.4 Bcl-2 inhibitors of programmed cell death
View Download 0.280 0.297 ribosome assembly d.108.1 Acyl-CoA N-acyltransferases (Nat)
View Download 0.275 0.297 ribosome assembly a.74.1 Cyclin-like
View Download 0.273 0.297 ribosome assembly a.1.1 Globin-like
View Download 0.258 0.297 ribosome assembly a.47.2 t-snare proteins
View Download 0.257 0.297 ribosome assembly a.39.2 Insect pheromon/odorant-binding proteins
View Download 0.251 0.297 ribosome assembly a.25.1 Ferritin-like
View Download 0.249 0.297 ribosome assembly d.224.1 SufE-like
View Download 0.249 0.297 ribosome assembly a.26.1 4-helical cytokines
View Download 0.243 0.297 ribosome assembly a.47.2 t-snare proteins
View Download 0.242 0.297 ribosome assembly a.118.1 ARM repeat
View Download 0.242 0.297 ribosome assembly a.118.1 ARM repeat
View Download 0.242 0.297 ribosome assembly d.108.1 Acyl-CoA N-acyltransferases (Nat)
View Download 0.237 0.297 ribosome assembly a.52.1 Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin
View Download 0.234 0.297 ribosome assembly a.118.11 Cytochrome c oxidase subunit E
View Download 0.232 0.297 ribosome assembly c.16.1 Lumazine synthase
View Download 0.231 0.297 ribosome assembly a.4.1 Homeodomain-like
View Download 0.231 0.297 ribosome assembly a.118.1 ARM repeat
View Download 0.227 0.297 ribosome assembly a.146.1 Telomeric repeat binding factor (TRF) dimerisation domain
View Download 0.216 0.297 ribosome assembly a.118.8 TPR-like
View Download 0.214 0.297 ribosome assembly a.152.1 Antioxidant defence protein AhpD
View Download 0.214 0.297 ribosome assembly a.146.1 Telomeric repeat binding factor (TRF) dimerisation domain
View Download 0.213 0.297 ribosome assembly a.78.1 Fatty acid responsive transcription factor FadR, C-terminal domain
View Download 0.212 0.297 ribosome assembly a.25.1 Ferritin-like
View Download 0.211 0.297 ribosome assembly c.37.1 P-loop containing nucleoside triphosphate hydrolases
View Download 0.210 0.297 ribosome assembly a.118.8 TPR-like
View Download 0.210 0.297 ribosome assembly a.170.1 BRCA2 helical domain
View Download 0.209 0.297 ribosome assembly a.123.1 Nuclear receptor ligand-binding domain
View Download 0.207 0.297 ribosome assembly a.47.2 t-snare proteins
View Download 0.206 0.297 ribosome assembly d.110.4 SNARE-like
View Download 0.202 0.297 ribosome assembly a.126.1 Serum albumin-like
View Download 0.201 0.297 ribosome assembly a.1.1 Globin-like
View Download 0.200 0.297 ribosome assembly a.24.3 Cytochromes

Predicted Domain #3
Region A:
Residues: [427-710]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 INSAEAYKIV YNWQFCHSLD FWSRVLSFAC QPEKENGSES PLRQLIYPLV QVTLGVIRLI  60
   61 PTPQFFPLRF YLIKSLIRLS QNSGVFIPIY PLLSEILTST AFTKAPKKSP NLAAFDFEHN 120
  121 IKCTQAYLNT KIYQEGLSEQ FVDLLGDYFA LYCKNIAFPE LVTPVIISLR RYIKTSTNVK 180
  181 LNKRLSTVVE KLNQNSTFIQ EKRSDVEFGP TNKSEVSRFL NDVAWNKTPL GSYVAVQREV 240
  241 KEEKARLMRE SMEEQDKERE TEEAKLLNSL ESDDDNEDVE MSDA

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle