| Protein: | DED1 |
| Organism: | Saccharomyces cerevisiae |
| Length: | 604 amino acids |
| Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for DED1.
| Description | E-value | Query Range |
Subject Range |
|
|
0.0 | [1..604] | [1..617] |
|
|
0.0 | [2..604] | [10..656] |
|
|
0.0 | [3..604] | [11..658] |
|
|
0.0 | [1..588] | [1..588] |
|
|
0.0 | [4..604] | [12..660] |
|
Region A: Residues: [1-142] |
1 11 21 31 41 51
| | | | | |
1 MAELSEQVQN LSINDNNENG YVPPHLRGKP RSARNNSSNY NNNNGGYNGG RGGGSFFSNN 60
61 RRGGYGNGGF FGGNNGGSRS NGRSGGRWID GKHVPAPRNE KAEIAIFGVP EDPNFQSSGI 120
121 NFDNYDDIPV DASGKDVPEP IT
|
| Detection Method: |  |
| Confidence: | 7.22 |
| Match: | 1deqA |
| Description: | Fibrinogen |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [143-369] |
1 11 21 31 41 51
| | | | | |
1 EFTSPPLDGL LLENIKLARF TKPTPVQKYS VPIVANGRDL MACAQTGSGK TGGFLFPVLS 60
61 ESFKTGPSPQ PESQGSFYQR KAYPTAVIMA PTRELATQIF DEAKKFTYRS WVKACVVYGG 120
121 SPIGNQLREI ERGCDLLVAT PGRLNDLLER GKISLANVKY LVLDEADRML DMGFEPQIRH 180
181 IVEDCDMTPV GERQTLMFSA TFPADIQHLA RDFLSDYIFL SVGRVGS
|
| Detection Method: | |
| Confidence: | 672.218487 |
| Match: | 1hv8A_ |
| Description: | Putative DEAD box RNA helicase |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [370-544] |
1 11 21 31 41 51
| | | | | |
1 TSENITQKVL YVENQDKKSA LLDLLSASTD GLTLIFVETK RMADQLTDFL IMQNFRATAI 60
61 HGDRTQSERE RALAAFRSGA ATLLVATAVA ARGLDIPNVT HVINYDLPSD VDDYVHRIGR 120
121 TGRAGNTGLA TAFFNSENSN IVKGLHEILT EANQEVPSFL KDAMMSAPGS RSNSR
|
| Detection Method: | |
| Confidence: | 672.218487 |
| Match: | 1hv8A_ |
| Description: | Putative DEAD box RNA helicase |
| Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [545-604] |
1 11 21 31 41 51
| | | | | |
1 RGGFGRNNNR DYRKAGGASA GGWGSSRSRD NSFRGGSGWG SDSKSSGWGN SGGSNNSSWW 60
61
|
| Detection Method: | |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
| MCM Score |
SCOP Match |
SCOP Description | ||
| View | Download | 0.307 | b.122.1 | PUA domain-like |
| View | Download | 0.283 | d.58.8 | Viral DNA-binding domain |
| View | Download | 0.454 | d.52.1 | Alpha-lytic protease prodomain |
