| Protein: | MSB1 |
| Organism: | Saccharomyces cerevisiae |
| Length: | 1137 amino acids |
| Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for MSB1.
| Description | E-value | Query Range |
Subject Range |
|
|
0.0 | [1..1137] | [1..1137] |
|
Region A: Residues: [1-1137] |
1 11 21 31 41 51
| | | | | |
1 MNDMAKPLPT PPTAEIRKSR SNSPKKAQKT NLSPNKNQNN EKNVPRSNGR TKNEHNSMDD 60
61 EEFEFFHQFS REKVKGVIHV ITAELKEKGP DVEFLMIPFR PEQTNDKLLT LLNQLFPLGN 120
121 GQPVNEKKQL RIVSKADVWT LFQCLKYIWC RLPNSEIIGW KSYLEFKFRE EDKKFPRKSF 180
181 LEIMPQCLAS PNHASIVYDF FDLIISISSN SRVNKMSARK ISKMCAIWAF SKQIPNSDIQ 240
241 DYDFESAAMK SFAPNNSIQD GLDQWIPASD AMFHLLLAFL RSFVPQDLES AKLPRTLKSL 300
301 LFNNQYPPRK STAYTSETIL TIPLVTLKTD VFSRKPWQLL ERCNDLLDFS DHDAFEARED 360
361 YALLKSLFRK KNTVEGISRK MSQESRRLMK AMSTKHSTFQ PGWAPRECIE NISHLKECIE 420
421 VKRLDIDDYF IWTWLSSLSF EQTSEKKKIF GRSIILEFEF DGFKKWVVFQ ECDITLDYNK 480
481 KGQLKKKTSA QSPTTEKELP PDDFELEDPP LSKSPTLSQT YKKFQAEVPQ QSTVRRDSAP 540
541 DNQGIYHTVI SKNALTKNKH NVNLHSFEHK ISKWNPLNNL RKKSGSNSSS SSFEEKSKDA 600
601 PIREEYHTNK NHKSKKEERV LSQFSTLNPD EYQLPVIETG SSNFKIEIPE LMYEHDDDDS 660
661 DKLKNSQKRA TDSAIEELNG MVEEMMINEP DDVKISITEA ETFESLTKFD QYKPSNITDD 720
721 DLQSSHSSAV HSLKLSTNTN DSCADSSKYT ADRKLAEPRK ISEESKVNDD SSSYYSPNIN 780
781 NLPASRMPSQ PTYSNSDSKK AFTNESRLNV LQGAVSPSQQ VTPKPYKNAP GDCVSPVQQK 840
841 YYQNDRRNEM SPASAPVPPS AYSPARSPQF STNSAGFKQN TINVPVGYND PAHVLANQPH 900
901 MTYRDQHNYP SHQQKQRPFQ NNIVPPELKS RNQRADASPI PQHMVPVKQG VPNLPSNVPL 960
961 YQQMERMNPN HQHPVNTYKV TQPPYHNNTT NAYGNSRAGN AHMLDGKWSN NPPQMVPKGV1020
1021 RPNQYPQQHV NRYSPQAQPV VPAEYYNGPP PMRAPPMMSH MVPAQEPIRY TAGANRRSFP1080
1081 QGMQQNAYSV PAQPMGAVNS EFYLPEAPQG NKLHGNINKR QERKKLYDNI RSGNFGI
|
| Detection Method: |  |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
| Term | Confidence | Notes |
| GTPase regulator activity | 4.71716966080106 | bayes_pls_golite062009 |
| nucleoside-triphosphatase regulator activity | 4.69832265514374 | bayes_pls_golite062009 |
| small GTPase regulator activity | 4.40136729916219 | bayes_pls_golite062009 |
| GTPase activator activity | 4.21856723160728 | bayes_pls_golite062009 |
| Ras GTPase activator activity | 4.1605878971879 | bayes_pls_golite062009 |
| enzyme regulator activity | 4.0832203055885 | bayes_pls_golite062009 |
| Rho GTPase activator activity | 3.97925606841162 | bayes_pls_golite062009 |
| enzyme activator activity | 3.75634032603914 | bayes_pls_golite062009 |
| Rac GTPase activator activity | 2.74441072565017 | bayes_pls_golite062009 |
| binding | 1.81232559960956 | bayes_pls_golite062009 |
| protein binding | 1.14158567179227 | bayes_pls_golite062009 |
| GTPase binding | 0.29835601475567 | bayes_pls_golite062009 |
| small GTPase binding | 0.129342092181805 | bayes_pls_golite062009 |
|
Region A: Residues: [309-588] |
1 11 21 31 41 51
| | | | | |
1 RKSTAYTSET ILTIPLVTLK TDVFSRKPWQ LLERCNDLLD FSDHDAFEAR EDYALLKSLF 60
61 RKKNTVEGIS RKMSQESRRL MKAMSTKHST FQPGWAPREC IENISHLKEC IEVKRLDIDD 120
121 YFIWTWLSSL SFEQTSEKKK IFGRSIILEF EFDGFKKWVV FQECDITLDY NKKGQLKKKT 180
181 SAQSPTTEKE LPPDDFELED PPLSKSPTLS QTYKKFQAEV PQQSTVRRDS APDNQGIYHT 240
241 VISKNALTKN KHNVNLHSFE HKISKWNPLN NLRKKSGSNS
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [589-771] |
1 11 21 31 41 51
| | | | | |
1 SSSSFEEKSK DAPIREEYHT NKNHKSKKEE RVLSQFSTLN PDEYQLPVIE TGSSNFKIEI 60
61 PELMYEHDDD DSDKLKNSQK RATDSAIEEL NGMVEEMMIN EPDDVKISIT EAETFESLTK 120
121 FDQYKPSNIT DDDLQSSHSS AVHSLKLSTN TNDSCADSSK YTADRKLAEP RKISEESKVN 180
181 DDS
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [772-929] |
1 11 21 31 41 51
| | | | | |
1 SSYYSPNINN LPASRMPSQP TYSNSDSKKA FTNESRLNVL QGAVSPSQQV TPKPYKNAPG 60
61 DCVSPVQQKY YQNDRRNEMS PASAPVPPSA YSPARSPQFS TNSAGFKQNT INVPVGYNDP 120
121 AHVLANQPHM TYRDQHNYPS HQQKQRPFQN NIVPPELK
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [930-1137] |
1 11 21 31 41 51
| | | | | |
1 SRNQRADASP IPQHMVPVKQ GVPNLPSNVP LYQQMERMNP NHQHPVNTYK VTQPPYHNNT 60
61 TNAYGNSRAG NAHMLDGKWS NNPPQMVPKG VRPNQYPQQH VNRYSPQAQP VVPAEYYNGP 120
121 PPMRAPPMMS HMVPAQEPIR YTAGANRRSF PQGMQQNAYS VPAQPMGAVN SEFYLPEAPQ 180
181 GNKLHGNINK RQERKKLYDN IRSGNFGI
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
