Protein: | MSB1 |
Organism: | Saccharomyces cerevisiae |
Length: | 1137 amino acids |
Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for MSB1.
Description | E-value | Query Range |
Subject Range |
|
0.0 | [1..1137] | [1..1137] |
Region A: Residues: [1-1137] |
1 11 21 31 41 51 | | | | | | 1 MNDMAKPLPT PPTAEIRKSR SNSPKKAQKT NLSPNKNQNN EKNVPRSNGR TKNEHNSMDD 60 61 EEFEFFHQFS REKVKGVIHV ITAELKEKGP DVEFLMIPFR PEQTNDKLLT LLNQLFPLGN 120 121 GQPVNEKKQL RIVSKADVWT LFQCLKYIWC RLPNSEIIGW KSYLEFKFRE EDKKFPRKSF 180 181 LEIMPQCLAS PNHASIVYDF FDLIISISSN SRVNKMSARK ISKMCAIWAF SKQIPNSDIQ 240 241 DYDFESAAMK SFAPNNSIQD GLDQWIPASD AMFHLLLAFL RSFVPQDLES AKLPRTLKSL 300 301 LFNNQYPPRK STAYTSETIL TIPLVTLKTD VFSRKPWQLL ERCNDLLDFS DHDAFEARED 360 361 YALLKSLFRK KNTVEGISRK MSQESRRLMK AMSTKHSTFQ PGWAPRECIE NISHLKECIE 420 421 VKRLDIDDYF IWTWLSSLSF EQTSEKKKIF GRSIILEFEF DGFKKWVVFQ ECDITLDYNK 480 481 KGQLKKKTSA QSPTTEKELP PDDFELEDPP LSKSPTLSQT YKKFQAEVPQ QSTVRRDSAP 540 541 DNQGIYHTVI SKNALTKNKH NVNLHSFEHK ISKWNPLNNL RKKSGSNSSS SSFEEKSKDA 600 601 PIREEYHTNK NHKSKKEERV LSQFSTLNPD EYQLPVIETG SSNFKIEIPE LMYEHDDDDS 660 661 DKLKNSQKRA TDSAIEELNG MVEEMMINEP DDVKISITEA ETFESLTKFD QYKPSNITDD 720 721 DLQSSHSSAV HSLKLSTNTN DSCADSSKYT ADRKLAEPRK ISEESKVNDD SSSYYSPNIN 780 781 NLPASRMPSQ PTYSNSDSKK AFTNESRLNV LQGAVSPSQQ VTPKPYKNAP GDCVSPVQQK 840 841 YYQNDRRNEM SPASAPVPPS AYSPARSPQF STNSAGFKQN TINVPVGYND PAHVLANQPH 900 901 MTYRDQHNYP SHQQKQRPFQ NNIVPPELKS RNQRADASPI PQHMVPVKQG VPNLPSNVPL 960 961 YQQMERMNPN HQHPVNTYKV TQPPYHNNTT NAYGNSRAGN AHMLDGKWSN NPPQMVPKGV1020 1021 RPNQYPQQHV NRYSPQAQPV VPAEYYNGPP PMRAPPMMSH MVPAQEPIRY TAGANRRSFP1080 1081 QGMQQNAYSV PAQPMGAVNS EFYLPEAPQG NKLHGNINKR QERKKLYDNI RSGNFGI |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.
Term | Confidence | Notes |
GTPase regulator activity | 4.71716966080106 | bayes_pls_golite062009 |
nucleoside-triphosphatase regulator activity | 4.69832265514374 | bayes_pls_golite062009 |
small GTPase regulator activity | 4.40136729916219 | bayes_pls_golite062009 |
GTPase activator activity | 4.21856723160728 | bayes_pls_golite062009 |
Ras GTPase activator activity | 4.1605878971879 | bayes_pls_golite062009 |
enzyme regulator activity | 4.0832203055885 | bayes_pls_golite062009 |
Rho GTPase activator activity | 3.97925606841162 | bayes_pls_golite062009 |
enzyme activator activity | 3.75634032603914 | bayes_pls_golite062009 |
Rac GTPase activator activity | 2.74441072565017 | bayes_pls_golite062009 |
binding | 1.81232559960956 | bayes_pls_golite062009 |
protein binding | 1.14158567179227 | bayes_pls_golite062009 |
GTPase binding | 0.29835601475567 | bayes_pls_golite062009 |
small GTPase binding | 0.129342092181805 | bayes_pls_golite062009 |
Region A: Residues: [309-588] |
1 11 21 31 41 51 | | | | | | 1 RKSTAYTSET ILTIPLVTLK TDVFSRKPWQ LLERCNDLLD FSDHDAFEAR EDYALLKSLF 60 61 RKKNTVEGIS RKMSQESRRL MKAMSTKHST FQPGWAPREC IENISHLKEC IEVKRLDIDD 120 121 YFIWTWLSSL SFEQTSEKKK IFGRSIILEF EFDGFKKWVV FQECDITLDY NKKGQLKKKT 180 181 SAQSPTTEKE LPPDDFELED PPLSKSPTLS QTYKKFQAEV PQQSTVRRDS APDNQGIYHT 240 241 VISKNALTKN KHNVNLHSFE HKISKWNPLN NLRKKSGSNS |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.
Region A: Residues: [589-771] |
1 11 21 31 41 51 | | | | | | 1 SSSSFEEKSK DAPIREEYHT NKNHKSKKEE RVLSQFSTLN PDEYQLPVIE TGSSNFKIEI 60 61 PELMYEHDDD DSDKLKNSQK RATDSAIEEL NGMVEEMMIN EPDDVKISIT EAETFESLTK 120 121 FDQYKPSNIT DDDLQSSHSS AVHSLKLSTN TNDSCADSSK YTADRKLAEP RKISEESKVN 180 181 DDS |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.
Region A: Residues: [772-929] |
1 11 21 31 41 51 | | | | | | 1 SSYYSPNINN LPASRMPSQP TYSNSDSKKA FTNESRLNVL QGAVSPSQQV TPKPYKNAPG 60 61 DCVSPVQQKY YQNDRRNEMS PASAPVPPSA YSPARSPQFS TNSAGFKQNT INVPVGYNDP 120 121 AHVLANQPHM TYRDQHNYPS HQQKQRPFQN NIVPPELK |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.
Region A: Residues: [930-1137] |
1 11 21 31 41 51 | | | | | | 1 SRNQRADASP IPQHMVPVKQ GVPNLPSNVP LYQQMERMNP NHQHPVNTYK VTQPPYHNNT 60 61 TNAYGNSRAG NAHMLDGKWS NNPPQMVPKG VRPNQYPQQH VNRYSPQAQP VVPAEYYNGP 120 121 PPMRAPPMMS HMVPAQEPIR YTAGANRRSF PQGMQQNAYS VPAQPMGAVN SEFYLPEAPQ 180 181 GNKLHGNINK RQERKKLYDN IRSGNFGI |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.