| Protein: | PNO1 |
| Organism: | Saccharomyces cerevisiae |
| Length: | 274 amino acids |
| Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for PNO1.
| Description | E-value | Query Range |
Subject Range |
|
|
1.0E-49 | [1..274] | [1..274] |
|
|
3.0E-47 | [50..274] | [27..248] |
|
|
1.0E-46 | [32..274] | [2..252] |
|
|
8.0E-46 | [1..252] | [200..454] |
|
|
4.0E-43 | [1..273] | [1..257] |
|
|
8.0E-42 | [1..252] | [138..392] |
|
Region A: Residues: [1-86] |
1 11 21 31 41 51
| | | | | |
1 MVAPTALKKA TVTPVSGQDG GSSRIIGINN TESIDEDDDD DVLLDDSDNN TAKEEVEGEE 60
61 GSRKTHESKT VVVDDQGKPR FTSASK
|
| Detection Method: |  |
Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.
| MCM Score |
GO Score |
GO Term |
SCOP Match |
SCOP Description | ||
| View | Download | 0.253 | 0.755 | rRNA processing | b.1.1 | Immunoglobulin |
| View | Download | 0.304 | 0.078 | rRNA processing | b.1.2 | Fibronectin type III |
| View | Download | 0.323 | 0.013 | rRNA processing | a.24.13 | Domain of the SRP/SRP receptor G-proteins |
|
Region A: Residues: [87-181] |
1 11 21 31 41 51
| | | | | |
1 TQGNKIKFES RKIMVPPHRM TPLRNSWTKI YPPLVEHLKL QVRMNLKTKS VELRTNPKFT 60
61 TDPGALQKGA DFIKAFTLGF DLDDSIALLR LDDLY
|
| Detection Method: | |
| Confidence: | 13.39794 |
| Match: | 1j4wA_ |
| Description: | Far upstream binding element, FBP, KH3 and KH4 domains |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| RNA binding | 6.07437653952404 | bayes_pls_golite062009 |
| mRNA binding | 4.07599584461947 | bayes_pls_golite062009 |
| nucleic acid binding | 3.68444148122352 | bayes_pls_golite062009 |
| binding | 3.31174833550232 | bayes_pls_golite062009 |
| 1.56143840583911 | bayes_pls_golite062009 | |
| transcription regulator activity | 1.43703138180882 | bayes_pls_golite062009 |
| protein binding | 1.37279927568272 | bayes_pls_golite062009 |
| DNA binding | 1.20852534725468 | bayes_pls_golite062009 |
| poly-pyrimidine tract binding | 0.9296581376632 | bayes_pls_golite062009 |
| transcription factor activity | 0.386248501195543 | bayes_pls_golite062009 |
| single-stranded RNA binding | 0.3686746342524 | bayes_pls_golite062009 |
| structure-specific DNA binding | 0.32222928997178 | bayes_pls_golite062009 |
| catalytic activity | 0.113112541746059 | bayes_pls_golite062009 |
| single-stranded DNA binding | 0.1069917291606 | bayes_pls_golite062009 |
|
Region A: Residues: [182-274] |
1 11 21 31 41 51
| | | | | |
1 IETFEVKDVK TLTGDHLSRA IGRIAGKDGK TKFAIENATR TRIVLADSKI HILGGFTHIR 60
61 MARESVVSLI LGSPPGKVYG NLRTVASRLK ERY
|
| Detection Method: | |
| Confidence: | 13.39794 |
| Match: | 1j4wA_ |
| Description: | Far upstream binding element, FBP, KH3 and KH4 domains |
| Matching Structure (courtesy of the PDB): |
|
