Protein: | ARP8 |
Organism: | Saccharomyces cerevisiae |
Length: | 881 amino acids |
Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for ARP8.
Description | E-value | Query Range |
Subject Range |
|
0.0 | [1..881] | [1..881] |
|
0.0 | [375..705] | [44..354] |
|
0.0 | [375..705] | [44..354] |
|
0.0 | [375..705] | [45..355] |
|
0.0 | [375..705] | [45..355] |
|
0.0 | [375..705] | [44..354] |
|
0.0 | [375..705] | [18..328] |
Region A: Residues: [1-108] |
1 11 21 31 41 51 | | | | | | 1 MSQEEAESSI IYEEPIDIPL EDDDDEDELE EENSVPLSSQ ADQENAENES DDSVDNVVGS 60 61 ETPRSVTGLS VDPRDVADEE DEDEEGEDED EDEDDNDVDN EDENDNDN |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
Region A: Residues: [109-309] |
1 11 21 31 41 51 | | | | | | 1 ANENENELGS SRDKRAPPAV QTSKRYKKYP KLDPAKAPPG KKVPLHLLEK RRLGRIKAAE 60 61 EFAKTLKKIG IEKVETTTLP ATGLFQPLML INQKNYSSDY LKKDDQIFAL RDRKFLRNNN 120 121 TSQISSTNTP DVIDLKSLPH SEASAAPLND EIDLNDPTAT IVIHPGSNSI KIGFPKDDHP 180 181 VVVPNCVAVP KKWLDLENSE H |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
Region A: Residues: [310-484] |
1 11 21 31 41 51 | | | | | | 1 VENVCLQREQ SEEFNNIKSE MEKNFRERMR YYKRKVPGNA HEQVVSFNEN SKPEIISEKN 60 61 DPSPIEWIFD DSKLYYGSDA LRCVDEKFVI RKPFRGGSFN VKSPYYKSLA ELISDVTKLL 120 121 EHALNSETLN VKPTKFNQYK VVLVIPDIFK KSHVETFIRV LLTELQFQAV AIIQE |
Region B: Residues: [690-705] |
1 11 21 31 41 51 | | | | | | 1 ENYGNTLKEN FAPLEK |
Detection Method: | |
Confidence: | 1023.9794 |
Match: | 2btfA_ |
Description: | Actin |
Matching Structure (courtesy of the PDB): |
Region A: Residues: [485-689] |
1 11 21 31 41 51 | | | | | | 1 SLATCYGAGI STSTCVVNIG AAETRIACVD EGTVLEHSAI TLDYGGDDIT RLFALFLLQS 60 61 DFPLQDWKID SKHGWLLAER LKKNFTTFQD ADVAVQLYNF MNRSPNQPTE KYEFKLFDEV 120 121 MLAPLALFFP QIFKLIRTSS HKNSSLEFQL PESRDLFTNE LNDWNSLSQF ESKEGNLYCD 180 181 LNDDLKILNR ILDAHNIIDQ LQDKP |
Detection Method: | |
Confidence: | 1023.9794 |
Match: | 2btfA_ |
Description: | Actin |
Matching Structure (courtesy of the PDB): |
Region A: Residues: [706-881] |
1 11 21 31 41 51 | | | | | | 1 AIVQSIANAS ITADVTRMNS FYSNILIVGG SSKIPALDFI LTDRINIWRP SLLSSASFPQ 60 61 FYKKLTKEIK DLEGHYVNAP DKTEDENKQI LQAQIKEKIV EELEEQHQNI EHQNGNEHIF 120 121 PVSIIPPPRD MNPALIIWKG ASVLAQIKLV EELFITNSDW DVHGSRILQY KCIFTY |
Detection Method: | |
Confidence: | 13.93 |
Match: | 1k8kA |
Description: | Actin-related protein 3, Arp3 |
Matching Structure (courtesy of the PDB): |