| Protein: | ARP8 |
| Organism: | Saccharomyces cerevisiae |
| Length: | 881 amino acids |
| Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for ARP8.
| Description | E-value | Query Range |
Subject Range |
|
|
0.0 | [1..881] | [1..881] |
|
|
0.0 | [375..705] | [44..354] |
|
|
0.0 | [375..705] | [44..354] |
|
|
0.0 | [375..705] | [45..355] |
|
|
0.0 | [375..705] | [45..355] |
|
|
0.0 | [375..705] | [44..354] |
|
|
0.0 | [375..705] | [18..328] |
|
Region A: Residues: [1-108] |
1 11 21 31 41 51
| | | | | |
1 MSQEEAESSI IYEEPIDIPL EDDDDEDELE EENSVPLSSQ ADQENAENES DDSVDNVVGS 60
61 ETPRSVTGLS VDPRDVADEE DEDEEGEDED EDEDDNDVDN EDENDNDN
|
| Detection Method: |  |
Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.
| MCM Score |
GO Score |
GO Term |
SCOP Match |
SCOP Description | ||
| View | Download | 0.292 | 0.001 | nucleus | a.77.1 | DEATH domain |
|
Region A: Residues: [109-309] |
1 11 21 31 41 51
| | | | | |
1 ANENENELGS SRDKRAPPAV QTSKRYKKYP KLDPAKAPPG KKVPLHLLEK RRLGRIKAAE 60
61 EFAKTLKKIG IEKVETTTLP ATGLFQPLML INQKNYSSDY LKKDDQIFAL RDRKFLRNNN 120
121 TSQISSTNTP DVIDLKSLPH SEASAAPLND EIDLNDPTAT IVIHPGSNSI KIGFPKDDHP 180
181 VVVPNCVAVP KKWLDLENSE H
|
| Detection Method: | |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.
|
Region A: Residues: [310-484] |
1 11 21 31 41 51
| | | | | |
1 VENVCLQREQ SEEFNNIKSE MEKNFRERMR YYKRKVPGNA HEQVVSFNEN SKPEIISEKN 60
61 DPSPIEWIFD DSKLYYGSDA LRCVDEKFVI RKPFRGGSFN VKSPYYKSLA ELISDVTKLL 120
121 EHALNSETLN VKPTKFNQYK VVLVIPDIFK KSHVETFIRV LLTELQFQAV AIIQE
|
|
Region B: Residues: [690-705] |
1 11 21 31 41 51
| | | | | |
1 ENYGNTLKEN FAPLEK
|
| Detection Method: | |
| Confidence: | 1023.9794 |
| Match: | 2btfA_ |
| Description: | Actin |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [485-689] |
1 11 21 31 41 51
| | | | | |
1 SLATCYGAGI STSTCVVNIG AAETRIACVD EGTVLEHSAI TLDYGGDDIT RLFALFLLQS 60
61 DFPLQDWKID SKHGWLLAER LKKNFTTFQD ADVAVQLYNF MNRSPNQPTE KYEFKLFDEV 120
121 MLAPLALFFP QIFKLIRTSS HKNSSLEFQL PESRDLFTNE LNDWNSLSQF ESKEGNLYCD 180
181 LNDDLKILNR ILDAHNIIDQ LQDKP
|
| Detection Method: | |
| Confidence: | 1023.9794 |
| Match: | 2btfA_ |
| Description: | Actin |
| Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [706-881] |
1 11 21 31 41 51
| | | | | |
1 AIVQSIANAS ITADVTRMNS FYSNILIVGG SSKIPALDFI LTDRINIWRP SLLSSASFPQ 60
61 FYKKLTKEIK DLEGHYVNAP DKTEDENKQI LQAQIKEKIV EELEEQHQNI EHQNGNEHIF 120
121 PVSIIPPPRD MNPALIIWKG ASVLAQIKLV EELFITNSDW DVHGSRILQY KCIFTY
|
| Detection Method: | |
| Confidence: | 13.93 |
| Match: | 1k8kA |
| Description: | Actin-related protein 3, Arp3 |
Matching Structure (courtesy of the PDB): |
|
