| Protein: | UBP2 |
| Organism: | Saccharomyces cerevisiae |
| Length: | 1272 amino acids |
| Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for UBP2.
| Description | E-value | Query Range |
Subject Range |
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0.0 | [1..1272] | [1..1272] |
|
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0.0 | [26..1272] | [12..1218] |
|
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0.0 | [442..1270] | [324..1136] |
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4.0E-51 | [686..1256] | [117..655] |
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2.0E-47 | [627..938] | [161..429] |
|
Region A: Residues: [1-616] |
1 11 21 31 41 51
| | | | | |
1 MPNEDNELQK AIENHHNQLL NQDKENADRN GSVIEDLPLY GTSINQQSTP GDVDDGKHLL 60
61 YPDIATNLPL KTSDRLLDDI LCDTIFLNST DPKVMQKGLQ SRGILKESML SYSTFRSSIR 120
121 PNCLGSLTDQ VVFQTKSEYD SISCPKYNKI HVFQAVIFNP SLAEQQISTF DDIVKIPIYH 180
181 LKVSVKVRQE LERLKKHVGV TQFHSLDHLH EYDRVDLSTF DSSDPNLLDY GIYVSDDTNK 240
241 LILIEIFKPE FNSPEEHESF TADAIKKRYN AMCVKNESLD KSETPSQVDC FYTLFKIFKG 300
301 PLTRKSKAEP TKTIDSGNLA LNTHLNPEWL TSKYGFQASS EIDEETNEIF TEYVPPDMVD 360
361 YVNDLETRKI RESFVRKCLQ LIFWGQLSTS LLAPNSPLKN TKSVKGMSSL QTSFSTLPWF 420
421 HLLGESRARI LLNSNEQTHS PLDAEPHFIN LSVSHYYTDR DIIRNYESLS SLDPENIGLY 480
481 FDALTYIANR KGAYQLIAYC GKQDIIGQEA LENALLMFKI NPKECNISEL NEATLLSIYK 540
541 YETSNKSQVT SNHLTNLKNA LRLLAKYTKS DKLKFYVDHE PYRALSQAYD TLSIDESVDE 600
601 DIIKTAYSVK INDSPG
|
| Detection Method: |  |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.
|
Region A: Residues: [617-722] |
1 11 21 31 41 51
| | | | | |
1 LKLDCDRALY TIAISKRSLD LFNFLTEECP QFSNYYGPEK LDYQEALKLL QVNENASDET 60
61 ILKIFKQKWF DENVYEPDQF LILRAALTKI SIERNSTLIT NFLLTG
|
| Detection Method: | |
Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.
| MCM Score |
GO Score |
GO Term |
SCOP Match |
SCOP Description | ||
| View | Download | 0.539 | 0.317 | protein deubiquitination | a.1.1 | Globin-like |
| View | Download | 0.893 | 0.067 | protein deubiquitination | a.118.9 | ENTH/VHS domain |
| View | Download | 0.781 | 0.019 | protein deubiquitination | a.85.1 | Hemocyanin, N-terminal domain |
| View | Download | 0.588 | 0.015 | protein deubiquitination | a.80.1 | DNA polymerase III clamp loader subunits, C-terminal domain |
| View | Download | 0.638 | 0.005 | protein deubiquitination | a.118.11 | Cytochrome c oxidase subunit E |
| View | Download | 0.532 | N/A | N/A | c.9.1 | Barstar (barnase inhibitor) |
| View | Download | 0.495 | N/A | N/A | a.118.8 | TPR-like |
| View | Download | 0.495 | N/A | N/A | a.3.1 | Cytochrome c |
| View | Download | 0.409 | N/A | N/A | a.52.1 | Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin |
| View | Download | 0.397 | N/A | N/A | a.1.1 | Globin-like |
| View | Download | 0.387 | N/A | N/A | a.39.1 | EF-hand |
| View | Download | 0.385 | N/A | N/A | a.39.1 | EF-hand |
| View | Download | 0.372 | N/A | N/A | a.44.1 | Disulphide-bond formation facilitator (DSBA), insertion domain |
| View | Download | 0.350 | N/A | N/A | a.1.1 | Globin-like |
| View | Download | 0.344 | N/A | N/A | a.77.1 | DEATH domain |
| View | Download | 0.340 | N/A | N/A | a.118.8 | TPR-like |
| View | Download | 0.336 | N/A | N/A | a.91.1 | Regulator of G-protein signalling, RGS |
| View | Download | 0.328 | N/A | N/A | a.79.1 | Antitermination factor NusB |
| View | Download | 0.326 | N/A | N/A | d.52.2 | GMP synthetase C-terminal dimerisation domain |
| View | Download | 0.318 | N/A | N/A | a.52.1 | Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin |
| View | Download | 0.296 | N/A | N/A | a.118.8 | TPR-like |
| View | Download | 0.294 | N/A | N/A | d.58.35 | Pseudouridine synthase |
| View | Download | 0.292 | N/A | N/A | a.60.5 | Barrier-to-autointegration factor, BAF |
| View | Download | 0.291 | N/A | N/A | a.4.3 | ARID-like |
| View | Download | 0.288 | N/A | N/A | a.79.1 | Antitermination factor NusB |
| View | Download | 0.287 | N/A | N/A | a.118.1 | ARM repeat |
| View | Download | 0.286 | N/A | N/A | c.58.1 | Aminoacid dehydrogenase-like, N-terminal domain |
| View | Download | 0.284 | N/A | N/A | a.126.1 | Serum albumin-like |
| View | Download | 0.279 | N/A | N/A | a.39.1 | EF-hand |
| View | Download | 0.279 | N/A | N/A | a.4.6 | C-terminal effector domain of the bipartite response regulators |
| View | Download | 0.278 | N/A | N/A | a.118.18 | Cysteine rich protein B (HcpB) |
| View | Download | 0.275 | N/A | N/A | a.118.8 | TPR-like |
| View | Download | 0.271 | N/A | N/A | d.168.1 | Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain |
| View | Download | 0.243 | N/A | N/A | a.118.1 | ARM repeat |
| View | Download | 0.239 | N/A | N/A | a.61.1 | Retroviral matrix proteins |
| View | Download | 0.233 | N/A | N/A | d.65.1 | Hedgehog/DD-pepidase |
| View | Download | 0.232 | N/A | N/A | a.77.1 | DEATH domain |
| View | Download | 0.229 | N/A | N/A | a.4.5 | "Winged helix" DNA-binding domain |
| View | Download | 0.224 | N/A | N/A | a.28.1 | ACP-like |
| View | Download | 0.220 | N/A | N/A | d.58.41 | SEA domain |
| View | Download | 0.218 | N/A | N/A | a.77.1 | DEATH domain |
| View | Download | 0.217 | N/A | N/A | a.24.11 | Bacterial GAP domain |
| View | Download | 0.214 | N/A | N/A | a.158.1 | F-box domain |
| View | Download | 0.213 | N/A | N/A | a.3.1 | Cytochrome c |
| View | Download | 0.210 | N/A | N/A | a.118.13 | Arp2/3 complex 16 kDa subunit ARPC5 |
| View | Download | 0.208 | N/A | N/A | a.4.5 | "Winged helix" DNA-binding domain |
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Region A: Residues: [723-786] |
1 11 21 31 41 51
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1 TIDPNSLPPE NWPTGINNIG NTCYLNSLLQ YYFSIAPLRR YVLEYQKTVE NFNDHLSNSG 60
61 HIRR
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| Detection Method: | |
| Confidence: | 13.69897 |
| Match: | PF00442 |
| Description: | No description for PF00442 was found. |
Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.
|
Region A: Residues: [787-838] |
1 11 21 31 41 51
| | | | | |
1 IGGREISRGE VERSIQFIYQ LRNLFYAMVH TRERCVTPSK ELAYLAFAPS NV
|
| Detection Method: | |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
| MCM Score |
SCOP Match |
SCOP Description | ||
| View | Download | 0.288 | a.4.1 | Homeodomain-like |
| View | Download | 0.236 | d.58.1 | 4Fe-4S ferredoxins |
| View | Download | 0.259 | d.51.1 | Eukaryotic type KH-domain (KH-domain type I) |
| View | Download | 0.525 | a.140.2 | SAP domain |
| View | Download | 0.239 | a.5.1 | DNA helicase RuvA subunit, C-terminal domain |
| View | Download | 0.232 | a.144.1 | PABC (PABP) domain |
| View | Download | 0.216 | d.64.1 | eIF1-like |
| View | Download | 0.211 | a.23.4 | Mitochondrial import receptor subunit Tom20 |
| View | Download | 0.211 | d.45.1 | ClpS-like |
| View | Download | 0.208 | a.10.1 | Protozoan pheromone proteins |
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Region A: Residues: [839-1184] |
1 11 21 31 41 51
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1 EVEFEVEGNK VVDQTGVLSD SKKETTDDAF TTKIKDTSLI DLEMEDGLNG DVGTDANRKK 60
61 NESNDAEVSE NEDTTGLTSP TRVAKISSDQ LENALEMGRQ QDVTECIGNV LFQIESGSEP 120
121 IRYDEDNEQY DLVKQLFYGT TKQSIVPLSA TNKVRTKVER FLSLLINIGD HPKDIYDAFD 180
181 SYFKDEYLTM EEYGDVIRTV AVTTFPTILQ VQIQRVYYDR ERLMPFKSIE PLPFKEVIYM 240
241 DRYADTENPL LLAKKKETEE MKQKLKVMKN RQRELLSRDD SGLTRKDAFL ESIKLLESDT 300
301 IKKTPLKIEA ANDVIKTLRN NVQNIDNELM KLYNDINSLE EKISHQ
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| Detection Method: | |
Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.
|
Region A: Residues: [1185-1272] |
1 11 21 31 41 51
| | | | | |
1 FDDFKEYGYS LFSVFIHRGE ASYGHYWIYI KDRNRNGIWR KYNDETISEV QEEEVFNFNE 60
61 GNTATPYFLV YVKQGQEGDI EPLKRILK
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| Detection Method: | |
| Confidence: | 23.886057 |
| Match: | PF00443 |
| Description: | Ubiquitin carboxyl-terminal hydrolase |
Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.
|
Region A: Residues: [1152-1272] |
1 11 21 31 41 51
| | | | | |
1 VIKTLRNNVQ NIDNELMKLY NDINSLEEKI SHQFDDFKEY GYSLFSVFIH RGEASYGHYW 60
61 IYIKDRNRNG IWRKYNDETI SEVQEEEVFN FNEGNTATPY FLVYVKQGQE GDIEPLKRIL 120
121 K
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| Detection Method: | |
| Confidence: | 36.0 |
| Match: | 2aynA |
| Description: | Structure of USP14, a proteasome-associated deubiquitinating enzyme |
Matching Structure (courtesy of the PDB): |
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