| Protein: | CTR9 |
| Organism: | Saccharomyces cerevisiae |
| Length: | 1077 amino acids |
| Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CTR9.
| Description | E-value | Query Range |
Subject Range |
|
|
0.0 | [1..1077] | [1..1077] |
|
|
1.0E-82 | [17..1047] | [18..1086] |
|
|
4.0E-82 | [19..1072] | [14..1029] |
|
|
6.0E-82 | [19..1072] | [14..1029] |
|
|
2.0E-81 | [261..796] | [18..524] |
|
|
3.0E-81 | [259..796] | [6..514] |
|
|
3.0E-81 | [259..796] | [6..514] |
|
Region A: Residues: [1-128] |
1 11 21 31 41 51
| | | | | |
1 MTNAMKVEGY PSMEWPTSLD IPLKASEELV GIDLETDLPD DPTDLKTLLV EENSEKEHWL 60
61 TIALAYCNHG KTNEGIKLIE MALDVFQNSE RASLHTFLTW AHLNLAKGQS LSVETKEHEL 120
121 TQAELNLK
|
| Detection Method: |  |
| Confidence: | 2.39794 |
| Match: | 1elrA_ |
| Description: | Hop |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [129-266] |
1 11 21 31 41 51
| | | | | |
1 DAIGFDPTWI GNMLATVELY YQRGHYDKAL ETSDLFVKSI HAEDHRSGRQ SKPNCLFLLL 60
61 RAKLLYQKEN YMASLKIFQE LLVINPVLQP DPRIGIGLCF WQLKDSKMAI KSWQRALQLN 120
121 PKNTSASILV LLGEFRES
|
| Detection Method: | |
| Confidence: | 33.69897 |
| Match: | 1fchA_ |
| Description: | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [267-352] |
1 11 21 31 41 51
| | | | | |
1 FTNSTNDKTF KEAFTKALSD LNNIFSENQH NPVLLTLLQT YYYFKGDYQT VLDIYHHRIL 60
61 KMSPMIAKIV LSESSFWCGR AHYALG
|
| Detection Method: | |
| Confidence: | 33.69897 |
| Match: | 1fchA_ |
| Description: | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) |
| Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| transcription elongation regulator activity | 5.39627565324437 | bayes_pls_golite062009 |
| RNA polymerase II transcription elongation factor activity | 3.27203876848788 | bayes_pls_golite062009 |
| binding | 2.45002000313605 | bayes_pls_golite062009 |
| transcription regulator activity | 2.36976362065221 | bayes_pls_golite062009 |
| DNA binding | 1.72247907299633 | bayes_pls_golite062009 |
| nucleic acid binding | 1.63537681687141 | bayes_pls_golite062009 |
| protein binding | 1.41340296563325 | bayes_pls_golite062009 |
| transcription factor activity | 1.0205750374806 | bayes_pls_golite062009 |
| N-acetyltransferase activity | 0.597017459591015 | bayes_pls_golite062009 |
| transcription factor binding | 0.447234745044969 | bayes_pls_golite062009 |
| N-acyltransferase activity | 0.36489074781643 | bayes_pls_golite062009 |
| transcription cofactor activity | 0.201108481303385 | bayes_pls_golite062009 |
| transcription coactivator activity | 0.0645101607447045 | bayes_pls_golite062009 |
| transcription activator activity | 0.0514451541233234 | bayes_pls_golite062009 |
| acetyltransferase activity | 0.0217632433282022 | bayes_pls_golite062009 |
|
Region A: Residues: [353-491] |
1 11 21 31 41 51
| | | | | |
1 DYRKSFIMFQ ESLKKNEDNL LAKLGLGQTQ IKNNLLEESI ITFENLYKTN ESLQELNYIL 60
61 GMLYAGKAFD AKTAKNTSAK EQSNLNEKAL KYLERYLKLT LATKNQLVIS RAYLVISQLY 120
121 ELQNQYKTSL DYLSKALEE
|
| Detection Method: | |
| Confidence: | 33.69897 |
| Match: | 1fchA_ |
| Description: | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) |
| Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [492-543] |
1 11 21 31 41 51
| | | | | |
1 MEFIKKEIPL EVLNNLACYH FINGDFIKAD DLFKQAKAKV SDKDESVNIT LE
|
| Detection Method: | |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
| MCM Score |
SCOP Match |
SCOP Description | ||
| View | Download | 0.394 | a.5.2 | UBA-like |
| View | Download | 0.467 | a.5.1 | DNA helicase RuvA subunit, C-terminal domain |
| View | Download | 0.254 | a.144.1 | PABC (PABP) domain |
| View | Download | 0.266 | a.5.7 | 4-hydroxy-2-oxovalerate aldolase DmpG, communication domain |
| View | Download | 0.279 | g.1.1 | Insulin-like |
| View | Download | 0.253 | a.140.2 | SAP domain |
| View | Download | 0.203 | d.47.1 | Ribosomal protein L11, N-terminal domain |
|
Region A: Residues: [544-629] |
1 11 21 31 41 51
| | | | | |
1 YNIARTNEKN DCEKSESIYS QVTSLHPAYI AARIRNLYLK FAQSKIEDSD MSTEMNKLLD 60
61 LNKSDLEIRS FYGWYLKNSK ERKNNE
|
| Detection Method: | |
| Confidence: | 2.30103 |
| Match: | 1jcqA_ |
| Description: | Protein farnesyltransferase alpha-subunit |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [630-688] |
1 11 21 31 41 51
| | | | | |
1 KSTTHNKETL VKYNSHDAYA LISLANLYVT IARDGKKSRN PKEQGKSKHS YLKAIQLYQ
|
| Detection Method: | |
| Confidence: | 2.30103 |
| Match: | 1jcqA_ |
| Description: | Protein farnesyltransferase alpha-subunit |
| Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [689-810] |
1 11 21 31 41 51
| | | | | |
1 KVLQVDPFNI FAAQGLAIIF AESKRLGPAL EILRKVRDSL DNEDVQLNLA HCYLEMREYG 60
61 KAIENYELVL KKFDNEKTRP HILNLLGRAW YARAIKETSV NFYQKALENA KTALDLFVKE 120
121 SS
|
| Detection Method: | |
| Confidence: | 4.221849 |
| Match: | 1i84S_ |
| Description: | Heavy meromyosin subfragment |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [811-1077] |
1 11 21 31 41 51
| | | | | |
1 KSKFIHSVKF NIALLHFQIA ETLRRSNPKF RTVQQIKDSL EGLKEGLELF RELNDLKEFN 60
61 MIPKEELEQR IQLGETTMKS ALERSLNEQE EFKKEQRAKI DEARKILEEN ELKEQGWMKQ 120
121 EEEARRLKLE KQAEEYRKLQ DEAQKIFQVR EAMAISEHNV KDDSDLSDKD NEYDEEQPRQ 180
181 KRKRSTKTKN SGESKRRKAA KKTLSDSDED DDDVVKKPSH NKGKKSQLSN EFIEDSDEEE 240
241 AQMSGSEQNK NDDNDENNDN DDNDGLF
|
| Detection Method: | |
| Confidence: | 4.221849 |
| Match: | 1i84S_ |
| Description: | Heavy meromyosin subfragment |
| Matching Structure (courtesy of the PDB): |
|
