| Protein: | RTC1 |
| Organism: | Saccharomyces cerevisiae |
| Length: | 1341 amino acids |
| Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RTC1.
| Description | E-value | Query Range |
Subject Range |
|
|
0.0 | [1..1341] | [1..1341] |
|
|
0.0 | [27..714] | [858..1493] |
|
|
0.0 | [61..597] | [819..1316] |
|
Region A: Residues: [1-110] |
1 11 21 31 41 51
| | | | | |
1 MSLSPHVENA SIPKGSTPIP KNRNVSSIGK GEFLGSSSSN NSSFRMNHYS NSGQPSVLDS 60
61 IRRPNLTPTF SYSNGVYMPE SHRTSSFNDS YLPYDKNPYA KTTGSMSNKS
|
| Detection Method: |  |
| Confidence: | 5.0 |
| Match: | 1c5kA_ |
| Description: | TolB, C-terminal domain; TolB, N-terminal domain |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [111-438] |
1 11 21 31 41 51
| | | | | |
1 NMKIKTKKNA INTNTRKSSG LIYTTKVDKE LSSIDKVNDP NINGLVCAGK THLGLYKFSP 60
61 SDRSIKCVHD FITPNSNTST RGTTSLLPKL SKRTRQNKFS TIADVKTGFN NYKNCIAVCN 120
121 NSTAISIYDL NKSSSIDNPL ITSLCEHTRS INSFDFNMVE SNLIISGGQD SCVKIWDLRS 180
181 NKSKSSNRSD ISINTASDSI RDVKWMPGYN FASKNDQGSS TYGNLKSGYK FASIHDSGYL 240
241 LKFDLRQPAQ YEKKLNAHTG PGLCLNWHPN QEYIATGGRD GKSCLWFVGD NANAAENTVL 300
301 NYGNSPSLHA PNTSLNNSGS LAFPKLTI
|
| Detection Method: | |
| Confidence: | 53.39794 |
| Match: | 1erjA_ |
| Description: | Tup1, C-terminal domain |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [439-552] |
1 11 21 31 41 51
| | | | | |
1 NTGYPVTKLK FKPAYSSNIY NSLLGISSMG DEAEVRIYSL ARKYIPKHVL LSETPSLGLV 60
61 WWDENLIFNI DKGTRINGWD INKEPTVLEN LSKNTTTWRD LDGNGLLSVG QEIG
|
| Detection Method: | |
| Confidence: | 77.154902 |
| Match: | 1gg2B_ |
| Description: | beta1-subunit of the signal-transducing G protein heterotrimer |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [553-715] |
1 11 21 31 41 51
| | | | | |
1 SYEVVEPELQ PTSSTTCKKH PGTIKNPKNG NPENQGIIGG IKKGFSHTGL TSFTPERPPT 60
61 LKAGPTFSTK SLTLASGASS FNSSSASLTS LTPQTENREE IAIEPPCIIT LDIPQIFNNI 120
121 RLTKIAHSRK KNVISESSSM KNSPVEKFKY LARQLKFSYI REH
|
| Detection Method: | |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [716-1129] |
1 11 21 31 41 51
| | | | | |
1 NVSDSADTAY KNDIENIDVV KNATETHGDN TTTTNNNDDG DDDDDDDDDD KIIESHLLKK 60
61 YNFPENNTWA TLMNEKVNNK KSKRNSSSSR EFDEKDVRSS ISSISASRQS HDRARKIDKN 120
121 VEAELQEKIQ TLVDLISIAT HNASVYLSID DLTNFKIWIL IRDSLLWDLK WMTSSQISSD 180
181 NASNMDANES SDFEAGENLK TGKEFPEEDG AGTSGAESLV EERPQAFRAN SDEPSDAEKK 240
241 PVSKLKEQLK NTEIIPYAQP NEDSDEVLTK LKELQNQRLE SRTKMGETVS DDVIIEEDEH 300
301 EHQEEEQPHD SPTKSAQFHA SPIAKSIPIL QKREHRKSFI DTFMLHSPNG YNGDTDIGNE 360
361 DDNISPRFTY NSVSPRSKVS SLQSYATTTS QLETFKKLSS HTAPIIGSPR HAPS
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [1130-1341] |
1 11 21 31 41 51
| | | | | |
1 RPDSIGREQL SSSLTKKLAK CKKIIADPPW DTKKLIKQLY NQATETGNVV LTVNILFLFQ 60
61 TIYQITEIDI AKDAIAHFLL LLHRYELFGI AADVLKYCPF EDIMGSEGDQ SSIRLFCERC 120
121 GELITNESSK EKLRAEAQQT GNKKIMDKFG YWYCDSCKKK NTSCVLCERP LKKLTMVILP 180
181 CGHEGHFQCI QEWFLDENEQ ECPGGCPGVA FI
|
| Detection Method: | |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [1122-1227] |
1 11 21 31 41 51
| | | | | |
1 GSPRHAPSRP DSIGREQLSS SLTKKLAKCK KIIADPPWDT KKLIKQLYNQ ATETGNVVLT 60
61 VNILFLFQTI YQITEIDIAK DAIAHFLLLL HRYELFGIAA DVLKYC
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [1228-1341] |
1 11 21 31 41 51
| | | | | |
1 PFEDIMGSEG DQSSIRLFCE RCGELITNES SKEKLRAEAQ QTGNKKIMDK FGYWYCDSCK 60
61 KKNTSCVLCE RPLKKLTMVI LPCGHEGHFQ CIQEWFLDEN EQECPGGCPG VAFI
|
| Detection Method: | |
| Confidence: | 1.03 |
| Match: | 2jm1A |
| Description: | No description for 2jm1A was found. |
