| Protein: | PAP2 |
| Organism: | Saccharomyces cerevisiae |
| Length: | 584 amino acids |
| Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for PAP2.
| Description | E-value | Query Range |
Subject Range |
|
|
0.0 | [1..584] | [1..584] |
|
|
0.0 | [4..549] | [24..558] |
|
|
3.0E-99 | [20..490] | [674..1125] |
|
|
4.0E-95 | [144..537] | [2..433] |
|
|
1.0E-94 | [144..537] | [2..433] |
|
|
1.0E-94 | [144..537] | [3..434] |
|
Region A: Residues: [1-116] |
1 11 21 31 41 51
| | | | | |
1 MGAKSVTASS SKKIKNRHNG KVKKSKKIKK VRKPQKSISL NDENEVEILP SRNEQETNKL 60
61 PKDHVTADGI LVLEHKSDDD EGFDVYDGHF DNPTDIPSTT EESKTPSLAV HGDEKD
|
| Detection Method: |  |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
| MCM Score |
SCOP Match |
SCOP Description | ||
| View | Download | 0.247 | a.4.5 | "Winged helix" DNA-binding domain |
| View | Download | 0.225 | c.2.1 | NAD(P)-binding Rossmann-fold domains |
| View | Download | 0.291 | c.51.1 | Anticodon-binding domain of Class II aaRS |
| View | Download | 0.333 | d.2.1 | Lysozyme-like |
| View | Download | 0.333 | d.2.1 | Lysozyme-like |
| View | Download | 0.291 | c.51.1 | Anticodon-binding domain of Class II aaRS |
| View | Download | 0.247 | a.4.5 | "Winged helix" DNA-binding domain |
| View | Download | 0.225 | c.2.1 | NAD(P)-binding Rossmann-fold domains |
|
Region A: Residues: [117-192] |
1 11 21 31 41 51
| | | | | |
1 LANNDDFISL SASSEDEQAE QEEEREKQEL EIKKEKQKEI LNTDYPWILN HDHSKQKEIS 60
61 DWLTFEIKDF VAYISP
|
|
Region B: Residues: [304-584] |
1 11 21 31 41 51
| | | | | |
1 AAKLIREWLD DTPGLRELVL IVKQFLHARR LNNVHTGGLG GFSIICLVFS FLHMHPRIIT 60
61 NEIDPKDNLG VLLIEFFELY GKNFGYDDVA LGSSDGYPVY FPKSTWSAIQ PIKNPFSLAI 120
121 QDPGDESNNI SRGSFNIRDI KKAFAGAFDL LTNRCFELHS ATFKDRLGKS ILGNVIKYRG 180
181 KARDFKDERG LVLNKAIIEN ENYHKKRSRI IHDEDFAEDT VTSTATATTT DDDYEITNPP 240
241 AKKAKIEEKP ESEPAKRNSG ETYITVSSED DDEDGYNPYT L
|
| Detection Method: | |
| Confidence: | 91.0 |
| Match: | 1f5aA_ |
| Description: | Poly(A) polymerase, middle domain; Poly(A) polymerase N-terminal, catalytic domain; Poly(A) polymerase, C-terminal domain |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| nucleic acid binding | 2.13067754075302 | bayes_pls_golite062009 |
| nucleotidyltransferase activity | 2.12021443504286 | bayes_pls_golite062009 |
| binding | 2.05218701326405 | bayes_pls_golite062009 |
| RNA binding | 1.77578561123536 | bayes_pls_golite062009 |
| polynucleotide adenylyltransferase activity | 1.54779952898232 | bayes_pls_golite062009 |
| DNA binding | 1.5286843489086 | bayes_pls_golite062009 |
| transferase activity, transferring phosphorus-containing groups | 1.08480919674453 | bayes_pls_golite062009 |
| DNA-directed DNA polymerase activity | 0.773960702302769 | bayes_pls_golite062009 |
| catalytic activity | 0.75232920999699 | bayes_pls_golite062009 |
| DNA polymerase activity | 0.739770356253601 | bayes_pls_golite062009 |
| transferase activity | 0.432029324907561 | bayes_pls_golite062009 |
| transcription factor binding | 0.227209369499116 | bayes_pls_golite062009 |
| protein binding | 0.0181192131028179 | bayes_pls_golite062009 |
|
Region A: Residues: [193-303] |
1 11 21 31 41 51
| | | | | |
1 SREEIEIRNQ TISTIREAVK QLWPDADLHV FGSYSTDLYL PGSDIDCVVT SELGGKESRN 60
61 NLYSLASHLK KKNLATEVEV VAKARVPIIK FVEPHSGIHI DVSFERTNGI E
|
| Detection Method: | |
| Confidence: | 91.0 |
| Match: | 1f5aA_ |
| Description: | Poly(A) polymerase, middle domain; Poly(A) polymerase N-terminal, catalytic domain; Poly(A) polymerase, C-terminal domain |
| Matching Structure (courtesy of the PDB): |
|
